Image Stack Utilities

Reduce dimensionality of image stacks.

Z-Project

Maximum intensity Z projection

Input Parameters

Image

Type: Image File (ij.ImagePlus)

Results

Z-Projection

Maximum-intensity projection along the Z axis.

Type: Image File (imagej.data.Dataset)

Reslice

Re-slice image by vertically sectioning along a line or polyline ROI, for example, to create XZ planes.

This command is a limited reimplementation of the ImageJ Reslice command (Image > Stacks > Reslice [/]…) which has been modified to run without the input dialog box. It ignores calibration data (i.e. uses 1-pixel units rather than distance units).

Input Parameters

Image

Type: Image File (ij.ImagePlus)

Slice lines

Requires line or polyline type ROIs.

Type: ROI Set (file) (ij.gui.Roi[])

Flip verticaly

Type: Logical (boolean)

Rotate 90 degrees

Type: Logical (boolean)

Results

Slice

Images of the XZ planes, where X is the distance along the ROI. Returns one image for each

Type: Image File (imagej.data.Dataset)