Uses of Class
org.nanes.slideset.pi.SlideSetPlugin

Packages that use SlideSetPlugin

Package	Description
org.nanes.slideset.pi	Slide Set commands and plugin management

Uses of SlideSetPlugin in org.nanes.slideset.pi

Subclasses of SlideSetPlugin in org.nanes.slideset.pi

Modifier and Type	Class and Description
class	BinRegions Sort one set of ROIs based on a second set of ROIs.
class	BorderStats Calculate average values for pixels along region of interest borders
class	BorderStatsNChan Calculate average values for pixels along region of interest borders
class	Correlation
class	CountIntersections Count intersections between ROI borders and a binary mask
class	CreateMask Generate a mask image from an ROI set.
class	CreateMaskMulti Generate a mask image from an ROI set, with each ROI labeled individually.
class	FilterRegions Filter one set of ROIs using another set of ROIs as a mask
class	FindMaxima Find maxima in an image using ij.plugin.filter.MaximumFinder
class	Manders SlideSet command for measuring Manders' Colocalization Coefficients within regions of interest.
class	MathAdd
class	MathDiv
class	MathMlt
class	MathRound Round a double to an int
class	MathSub
class	OtsuSegmentation Segment an image using Otsu's method.
class	PointsTable Extract coordinates from PointRois into a table
class	RegionStats
class	RegionStatsNChan
class	RegionStatsNChanExclusion This is a modification of RegionStatsNChan designed to exclude pixels below the given threshold.
class	Reslice Reslice image along a linear ROI This command is a limited reimplementation of the ImageJ Reslice command (ij.plugin.Slicer).
class	ROILengths
class	ROIOverlap Count overlapping pixels in two sets of ROIs.
class	Test Test SlideSet compatible plugin
class	ThresholdSegmentation Segment an image into 4-neighborhood regions based on threshold values.
class	UnmixAbsorbance Separate RGB images into two absorbance components.
class	WekaSegmentationWrapper Wrapper to access the Trainable Weka Segmentation plugin
class	ZProject Maximum-intensity Z-projection