org.nanes.slideset.pi

Class CreateMaskMulti

java.lang.Object

org.nanes.slideset.pi.SlideSetPlugin

org.nanes.slideset.pi.CreateMaskMulti

All Implemented Interfaces:

Runnable, org.scijava.command.Command, org.scijava.plugin.SciJavaPlugin

@HelpPath(path="plugins/createmask.html")
public class CreateMaskMulti
extends SlideSetPlugin

Generate a mask image from an ROI set, with each ROI labeled individually.

Author:

Benjamin Nanes Returns an image the same size as the template image with values: 0 if outside of all ROIs 1,2,...N if inside ROI 1,2,...N If a pixel is inside multiple ROIs, value will be the highest ROI containing the pixel

Field Summary

Fields

Modifier and Type	Field and Description
private org.scijava.Context	context
private net.imagej.Dataset	mask
private static byte	nil
private net.imagej.overlay.AbstractOverlay[]	regions
private net.imagej.Dataset	template

Constructor Summary

Constructors

Constructor and Description
CreateMaskMulti()

Method Summary

Modifier and Type	Method and Description
private boolean	inBounds(double[] pos, long[] dims)
void	run()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

context

private org.scijava.Context context

regions

private net.imagej.overlay.AbstractOverlay[] regions

template

private net.imagej.Dataset template

mask

private net.imagej.Dataset mask

nil

private static final byte nil

See Also:

Constant Field Values

Constructor Detail

CreateMaskMulti

public CreateMaskMulti()

Method Detail

run

public void run()

inBounds

private boolean inBounds(double[] pos,
                         long[] dims)