- a - Variable in class org.nanes.slideset.pi.MathAdd
-
- a - Variable in class org.nanes.slideset.pi.MathAdd
-
- a - Variable in class org.nanes.slideset.pi.MathDiv
-
- a - Variable in class org.nanes.slideset.pi.MathDiv
-
- a - Variable in class org.nanes.slideset.pi.MathMlt
-
- a - Variable in class org.nanes.slideset.pi.MathMlt
-
- a - Variable in class org.nanes.slideset.pi.MathRound
-
- a - Variable in class org.nanes.slideset.pi.MathRound
-
- a - Variable in class org.nanes.slideset.pi.MathSub
-
- a - Variable in class org.nanes.slideset.pi.MathSub
-
- AboutPage() - Constructor for class org.nanes.slideset.ui.HttpHelpLoader.AboutPage
-
- AboutPage() - Constructor for class org.nanes.slideset.ui.HttpHelpLoader.AboutPage
-
- AbstractOverlaysAlias - Class in org.nanes.slideset.dm
-
Alias for imagej.data.overlay.AbstractOverlay[]
- AbstractOverlaysAlias - Class in org.nanes.slideset.dm
-
Alias for imagej.data.overlay.AbstractOverlay[]
- AbstractOverlaysAlias() - Constructor for class org.nanes.slideset.dm.AbstractOverlaysAlias
-
- AbstractOverlaysAlias() - Constructor for class org.nanes.slideset.dm.AbstractOverlaysAlias
-
- AbstractOverlaysToRoisetFileWriter - Class in org.nanes.slideset.dm.write
-
- AbstractOverlaysToRoisetFileWriter - Class in org.nanes.slideset.dm.write
-
- AbstractOverlaysToRoisetFileWriter() - Constructor for class org.nanes.slideset.dm.write.AbstractOverlaysToRoisetFileWriter
-
- AbstractOverlaysToRoisetFileWriter() - Constructor for class org.nanes.slideset.dm.write.AbstractOverlaysToRoisetFileWriter
-
- AbstractOverlaysToSVGFileWriter - Class in org.nanes.slideset.dm.write
-
- AbstractOverlaysToSVGFileWriter - Class in org.nanes.slideset.dm.write
-
- AbstractOverlaysToSVGFileWriter() - Constructor for class org.nanes.slideset.dm.write.AbstractOverlaysToSVGFileWriter
-
- AbstractOverlaysToSVGFileWriter() - Constructor for class org.nanes.slideset.dm.write.AbstractOverlaysToSVGFileWriter
-
- actionPerformed(ActionEvent) - Method in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
Listener for button actions
- actionPerformed(ActionEvent) - Method in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
Listener for button actions
- actionPerformed(ActionEvent) - Method in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- actionPerformed(ActionEvent) - Method in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- actionPerformed(ActionEvent) - Method in class org.nanes.slideset.ui.RoiEditor
-
Action handler
- actionPerformed(ActionEvent) - Method in class org.nanes.slideset.ui.RoiEditor
-
Action handler
- actionPerformed(ActionEvent) - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Action handler
- actionPerformed(ActionEvent) - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Action handler
- actionPerformed(ActionEvent) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
ActionListener implementation
- actionPerformed(ActionEvent) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
ActionListener implementation
- actionPerformed(ActionEvent) - Method in class org.nanes.slideset.ui.SlideSetPropertiesViewer
-
- actionPerformed(ActionEvent) - Method in class org.nanes.slideset.ui.SlideSetPropertiesViewer
-
- actionPerformed(ActionEvent) - Method in class org.nanes.slideset.ui.SlideSetViewer
-
ActionListener implementation
- actionPerformed(ActionEvent) - Method in class org.nanes.slideset.ui.SlideSetViewer
-
ActionListener implementation
- active - Variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
- active - Variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
- active - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- active - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- active - Variable in class org.nanes.slideset.ui.RoiEditor
-
Active flag
- active - Variable in class org.nanes.slideset.ui.RoiEditor
-
Active flag
- active - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
Active flag
- active - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
Active flag
- addAlphabetized(JMenuItem, JMenu, boolean) - Static method in class org.nanes.slideset.ui.UIUtil
-
Add a menu item to it's proper alphabetized position
in the menu.
- addAlphabetized(JMenuItem, JMenu, boolean) - Static method in class org.nanes.slideset.ui.UIUtil
-
Add a menu item to it's proper alphabetized position
in the menu.
- addChild(SlideSet) - Method in class org.nanes.slideset.SlideSet
-
Register a SlideSet
as the child of this SlideSet
- addChild(SlideSet) - Method in class org.nanes.slideset.SlideSet
-
Register a SlideSet
as the child of this SlideSet
- addColumn(LinkedHashMap<String, String>) - Method in class org.nanes.slideset.SlideSet
-
Add an empty column
- addColumn(String, String) - Method in class org.nanes.slideset.SlideSet
-
Add an empty column with no (null
) MIME type.
- addColumn(String, Class<? extends DataElement>) - Method in class org.nanes.slideset.SlideSet
-
Add an empty column with no (null
) MIME type.
- addColumn(String, String, String) - Method in class org.nanes.slideset.SlideSet
-
Add an empty column.
- addColumn(String, Class<? extends DataElement>, String) - Method in class org.nanes.slideset.SlideSet
-
Add an empty column.
- addColumn(LinkedHashMap<String, String>, ArrayList<DataElement<?>>) - Method in class org.nanes.slideset.SlideSet
-
Add a column with data
- addColumn(LinkedHashMap<String, String>) - Method in class org.nanes.slideset.SlideSet
-
Add an empty column
- addColumn(String, String) - Method in class org.nanes.slideset.SlideSet
-
Add an empty column with no (null
) MIME type.
- addColumn(String, Class<? extends DataElement>) - Method in class org.nanes.slideset.SlideSet
-
Add an empty column with no (null
) MIME type.
- addColumn(String, String, String) - Method in class org.nanes.slideset.SlideSet
-
Add an empty column.
- addColumn(String, Class<? extends DataElement>, String) - Method in class org.nanes.slideset.SlideSet
-
Add an empty column.
- addColumn(LinkedHashMap<String, String>, ArrayList<DataElement<?>>) - Method in class org.nanes.slideset.SlideSet
-
Add a column with data
- addColumnsForParentFields(ArrayList<Integer>, SlideSet, SlideSet) - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
Add columns to the results table for included fields from
the input table
- addColumnsForParentFields(ArrayList<Integer>, SlideSet, SlideSet) - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
Add columns to the results table for included fields from
the input table
- addDynamicResource(String, DynamicHelpResource) - Method in class org.nanes.slideset.ui.JarHTTPd
-
Add mapping for a dynamically generated resource
- addDynamicResource(String, DynamicHelpResource) - Method in class org.nanes.slideset.ui.JarHTTPd
-
Add mapping for a dynamically generated resource
- addFast(Data, ImageDisplayService) - Method in class org.nanes.slideset.ui.FastUpdateImageDisplay
-
Add Data
to the display without rebuilding.
- addFast(Data, ImageDisplayService) - Method in class org.nanes.slideset.ui.FastUpdateImageDisplay
-
Add Data
to the display without rebuilding.
- addHeader(String, String) - Method in class org.nanes.slideset.ui.NanoHTTPd.Response
-
Adds given line to the header.
- addHeader(String, String) - Method in class org.nanes.slideset.ui.NanoHTTPd.Response
-
Adds given line to the header.
- addInput(String, String[], Object[], String[]) - Method in class org.nanes.slideset.io.CommandSkeletonService.CommandTemplateInputPicker
-
- addInput(String, String[], Object[], String[]) - Method in class org.nanes.slideset.io.CommandSkeletonService.CommandTemplateInputPicker
-
- addInput(String, String[], Object[], String[]) - Method in interface org.nanes.slideset.pi.PluginInputPicker
-
Register a plugin input and the options
available for assigning its value.
- addInput(String, String[], Object[], String[]) - Method in interface org.nanes.slideset.pi.PluginInputPicker
-
Register a plugin input and the options
available for assigning its value.
- addInput(String, String[], Object[], String[]) - Method in class org.nanes.slideset.script.PluginInputMatcher
-
- addInput(String, String[], Object[], String[]) - Method in class org.nanes.slideset.script.PluginInputMatcher
-
- addInput(String, String[], Object[], String[]) - Method in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
Add an input to the dialog (before display please)
- addInput(String, String[], Object[], String[]) - Method in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
Add an input to the dialog (before display please)
- addOutput(String, String[], boolean[], String[], String[], String[]) - Method in class org.nanes.slideset.io.CommandSkeletonService.CommandTemplateOutputPicker
-
- addOutput(String, String[], boolean[], String[], String[], String[]) - Method in class org.nanes.slideset.io.CommandSkeletonService.CommandTemplateOutputPicker
-
- addOutput(String, String[], boolean[], String[], String[], String[]) - Method in interface org.nanes.slideset.pi.PluginOutputPicker
-
Register a plugin output and available
options for handling its value.
- addOutput(String, String[], boolean[], String[], String[], String[]) - Method in interface org.nanes.slideset.pi.PluginOutputPicker
-
Register a plugin output and available
options for handling its value.
- addOutput(String, String[], boolean[], String[], String[], String[]) - Method in class org.nanes.slideset.script.PluginOutputMatcher
-
- addOutput(String, String[], boolean[], String[], String[], String[]) - Method in class org.nanes.slideset.script.PluginOutputMatcher
-
- addOutput(String, String[], boolean[], String[], String[], String[]) - Method in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- addOutput(String, String[], boolean[], String[], String[], String[]) - Method in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- addRoiSet - Variable in class org.nanes.slideset.ui.RoiEditor
-
- addRoiSet - Variable in class org.nanes.slideset.ui.RoiEditor
-
- addRoiSet - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- addRoiSet - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- addRoot(String) - Method in class org.nanes.slideset.ui.HttpHelpLoader
-
Add a package for the help server to search when looking for
documentation resources.
- addRoot(String) - Method in class org.nanes.slideset.ui.HttpHelpLoader
-
Add a package for the help server to search when looking for
documentation resources.
- addRoot(String) - Method in class org.nanes.slideset.ui.JarHTTPd
-
- addRoot(String) - Method in class org.nanes.slideset.ui.JarHTTPd
-
- addRow() - Method in class org.nanes.slideset.SlideSet
-
Add a row with default values
- addRow(List<DataElement>) - Method in class org.nanes.slideset.SlideSet
-
Add a row from a List
of DataElement
s.
- addRow() - Method in class org.nanes.slideset.SlideSet
-
Add a row with default values
- addRow(List<DataElement>) - Method in class org.nanes.slideset.SlideSet
-
Add a row from a List
of DataElement
s.
- addWindowListener(WindowListener) - Method in interface org.nanes.slideset.ui.SlideSetWindow
-
- addWindowListener(WindowListener) - Method in interface org.nanes.slideset.ui.SlideSetWindow
-
- and - Variable in class org.nanes.slideset.pi.ThresholdSegmentation
-
- and - Variable in class org.nanes.slideset.pi.ThresholdSegmentation
-
- ao - Variable in class org.nanes.slideset.pi.Test
-
- ao - Variable in class org.nanes.slideset.pi.Test
-
- aoutb - Variable in class org.nanes.slideset.pi.ROIOverlap
-
- aoutb - Variable in class org.nanes.slideset.pi.ROIOverlap
-
- applyDefaultStyles(XMLStreamWriter) - Method in class org.nanes.slideset.dm.write.AbstractOverlaysToSVGFileWriter
-
Default SVG styling attributes for overlays
- applyDefaultStyles(XMLStreamWriter) - Method in class org.nanes.slideset.dm.write.AbstractOverlaysToSVGFileWriter
-
Default SVG styling attributes for overlays
- applyDefaultStyles(XMLStreamWriter) - Method in class org.nanes.slideset.dm.write.IJ1ROIsToSVGFileWriter
-
Default SVG styling attributes for overlays
- applyDefaultStyles(XMLStreamWriter) - Method in class org.nanes.slideset.dm.write.IJ1ROIsToSVGFileWriter
-
Default SVG styling attributes for overlays
- arcAsEllipse(String, String, double[], String, Element) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Attempt to generate an ellipse overlay from an arc path
- arcAsEllipse(String, String, double[], String, Element) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Attempt to generate an ellipse overlay from an arc path
- arcAsEllipse(String, String, double[], String, Element) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Attempt to generate an ellipse ROI from an arc path
- arcAsEllipse(String, String, double[], String, Element) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Attempt to generate an ellipse ROI from an arc path
- attachKillListener(Window) - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Attach a listener to a Window
, so that when the
Window
closes, the ROI Editor will close as well.
- attachKillListener(Window) - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Attach a listener to a Window
, so that when the
Window
closes, the ROI Editor will close as well.
- autoscaleService - Variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- autoscaleService - Variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- c - Variable in class org.nanes.slideset.pi.MathAdd
-
- c - Variable in class org.nanes.slideset.pi.MathAdd
-
- c - Variable in class org.nanes.slideset.pi.MathDiv
-
- c - Variable in class org.nanes.slideset.pi.MathDiv
-
- c - Variable in class org.nanes.slideset.pi.MathMlt
-
- c - Variable in class org.nanes.slideset.pi.MathMlt
-
- c - Variable in class org.nanes.slideset.pi.MathSub
-
- c - Variable in class org.nanes.slideset.pi.MathSub
-
- c - Variable in class org.nanes.slideset.SlideSetIJ2Entry
-
- c - Variable in class org.nanes.slideset.SlideSetIJ2Entry
-
- c1 - Variable in class org.nanes.slideset.pi.Correlation
-
- c1 - Variable in class org.nanes.slideset.pi.Correlation
-
- c1 - Variable in class org.nanes.slideset.pi.Manders
-
- c1 - Variable in class org.nanes.slideset.pi.Manders
-
- c2 - Variable in class org.nanes.slideset.pi.Correlation
-
- c2 - Variable in class org.nanes.slideset.pi.Correlation
-
- c2 - Variable in class org.nanes.slideset.pi.Manders
-
- c2 - Variable in class org.nanes.slideset.pi.Manders
-
- cancelPressed - Variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
- cancelPressed - Variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
- cancelPressed - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- cancelPressed - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- canImport(TransferHandler.TransferSupport) - Method in class org.nanes.slideset.ui.SlideSetLauncher.DropHandler
-
- canImport(TransferHandler.TransferSupport) - Method in class org.nanes.slideset.ui.SlideSetLauncher.DropHandler
-
- canImport(TransferHandler.TransferSupport) - Method in class org.nanes.slideset.ui.SlideSetViewer.DropHandler
-
- canImport(TransferHandler.TransferSupport) - Method in class org.nanes.slideset.ui.SlideSetViewer.DropHandler
-
- cfr - Variable in class org.nanes.slideset.pi.WekaSegmentationWrapper
-
- cfr - Variable in class org.nanes.slideset.pi.WekaSegmentationWrapper
-
- chan - Variable in class org.nanes.slideset.pi.FindMaxima
-
- chan - Variable in class org.nanes.slideset.pi.FindMaxima
-
- changeColorMode() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Open the IJ1 channels tool.
- changeColorMode() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Open the IJ1 channels tool.
- changed - Variable in class org.nanes.slideset.ui.RoiEditor
-
Changed flag
- changed - Variable in class org.nanes.slideset.ui.RoiEditor
-
Changed flag
- changed - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
Changed flag
- changed - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
Changed flag
- changed - Variable in class org.nanes.slideset.ui.SlideSetLauncher
-
Has the open file been changed?
- changed - Variable in class org.nanes.slideset.ui.SlideSetLauncher
-
Has the open file been changed?
- changeDisplayMode() - Method in class org.nanes.slideset.ui.RoiEditor
-
Update the color mode
- changeDisplayMode() - Method in class org.nanes.slideset.ui.RoiEditor
-
Update the color mode
- changeLevels - Variable in class org.nanes.slideset.ui.RoiEditor
-
- changeLevels() - Method in class org.nanes.slideset.ui.RoiEditor
-
Open the Brightness/Contrast dialog
- changeLevels - Variable in class org.nanes.slideset.ui.RoiEditor
-
- changeLevels() - Method in class org.nanes.slideset.ui.RoiEditor
-
Open the Brightness/Contrast dialog
- changeLevels - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- changeLevels() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Open the IJ1 Contrast Adjuster.
- changeLevels - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- changeLevels() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Open the IJ1 Contrast Adjuster.
- channels - Variable in class org.nanes.slideset.pi.OtsuSegmentation
-
- channels - Variable in class org.nanes.slideset.pi.OtsuSegmentation
-
- chans - Variable in class org.nanes.slideset.pi.BorderStatsNChan
-
- chans - Variable in class org.nanes.slideset.pi.BorderStatsNChan
-
- chans - Variable in class org.nanes.slideset.pi.RegionStatsNChan
-
- chans - Variable in class org.nanes.slideset.pi.RegionStatsNChan
-
- chans - Variable in class org.nanes.slideset.pi.RegionStatsNChanExclusion
-
- chans - Variable in class org.nanes.slideset.pi.RegionStatsNChanExclusion
-
- checkBounds(int, int) - Method in class org.nanes.slideset.SlideSet
-
Check validity of an index pair
- checkBounds(int, int) - Method in class org.nanes.slideset.SlideSet
-
Check validity of an index pair
- checkboxes - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- checkboxes - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- checkChanged() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Check if the data set has been changed
and offer to save it if applicable.
- checkChanged() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Check if the data set has been changed
and offer to save it if applicable.
- checkColumnBounds(int) - Method in class org.nanes.slideset.SlideSet
-
Check validity of a column index
- checkColumnBounds(int) - Method in class org.nanes.slideset.SlideSet
-
Check validity of a column index
- checkColumnElementConsistency(int) - Method in class org.nanes.slideset.SlideSet
-
Check if all the
DataElement
s in this column
are of the same type and have the same MIME type set.
- checkColumnElementConsistency(int) - Method in class org.nanes.slideset.SlideSet
-
Check if all the
DataElement
s in this column
are of the same type and have the same MIME type set.
- checkColumnLengths() - Method in class org.nanes.slideset.SlideSet
-
Check to make sure each column is of equal length
- checkColumnLengths() - Method in class org.nanes.slideset.SlideSet
-
Check to make sure each column is of equal length
- checkDataElementCompatibility(int, DataElement<?>) - Method in class org.nanes.slideset.SlideSet
-
Check if the class and MIME type of a
DataElement
match those of a column in this table.
- checkDataElementCompatibility(int, DataElement<?>) - Method in class org.nanes.slideset.SlideSet
-
Check if the class and MIME type of a
DataElement
match those of a column in this table.
- checkRowBounds(int) - Method in class org.nanes.slideset.SlideSet
-
Check validity of a row index
- checkRowBounds(int) - Method in class org.nanes.slideset.SlideSet
-
Check validity of a row index
- checkUnderlyingCompatability(int, Object) - Method in class org.nanes.slideset.SlideSet
-
Check if an object may be stored in a column directly
using a setUnderlying()
method (i.e.
- checkUnderlyingCompatability(int, Object) - Method in class org.nanes.slideset.SlideSet
-
Check if an object may be stored in a column directly
using a setUnderlying()
method (i.e.
- checkUpdateSite() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
- checkUpdateSite() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
- children - Variable in class org.nanes.slideset.SlideSet
-
Children of this SlideSet
- children - Variable in class org.nanes.slideset.SlideSet
-
Children of this SlideSet
- childWindows - Variable in class org.nanes.slideset.ui.SlideSetLauncher
-
List of open child windows
- childWindows - Variable in class org.nanes.slideset.ui.SlideSetLauncher
-
List of open child windows
- choices - Variable in class org.nanes.slideset.script.PluginInputMatcher
-
- choices - Variable in class org.nanes.slideset.script.PluginInputMatcher
-
- className - Variable in class org.nanes.slideset.dm.CommandTemplate
-
Command class name
- className - Variable in class org.nanes.slideset.dm.CommandTemplate
-
Command class name
- clearOverlaysFast() - Method in class org.nanes.slideset.ui.FastUpdateImageDisplay
-
Remove all Overlay
s from the display without
rebuilding.
- clearOverlaysFast() - Method in class org.nanes.slideset.ui.FastUpdateImageDisplay
-
Remove all Overlay
s from the display without
rebuilding.
- closeChildWindows() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Close any open child windows.
- closeChildWindows() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Close any open child windows.
- closeFile(XMLStreamWriter) - Method in class org.nanes.slideset.dm.write.AbstractOverlaysToSVGFileWriter
-
End the SVG file and do cleanup
- closeFile(XMLStreamWriter) - Method in class org.nanes.slideset.dm.write.AbstractOverlaysToSVGFileWriter
-
End the SVG file and do cleanup
- closeFile(XMLStreamWriter) - Method in class org.nanes.slideset.dm.write.IJ1ROIsToSVGFileWriter
-
End the SVG file and do cleanup
- closeFile(XMLStreamWriter) - Method in class org.nanes.slideset.dm.write.IJ1ROIsToSVGFileWriter
-
End the SVG file and do cleanup
- colNames(SlideSet) - Method in class org.nanes.slideset.io.CSVService
-
- colNames(SlideSet) - Method in class org.nanes.slideset.io.CSVService
-
- column - Variable in class org.nanes.slideset.dm.ColumnBoundReader
-
- column - Variable in class org.nanes.slideset.dm.ColumnBoundReader
-
- column - Variable in class org.nanes.slideset.dm.ColumnBoundWriter
-
- column - Variable in class org.nanes.slideset.dm.ColumnBoundWriter
-
- ColumnBoundReader<E extends DataElement,P> - Class in org.nanes.slideset.dm
-
- ColumnBoundReader<E extends DataElement,P> - Class in org.nanes.slideset.dm
-
- ColumnBoundReader(SlideSet, int, ElementReader<E, P>) - Constructor for class org.nanes.slideset.dm.ColumnBoundReader
-
- ColumnBoundReader(E, ElementReader<E, P>, DataTypeIDService) - Constructor for class org.nanes.slideset.dm.ColumnBoundReader
-
- ColumnBoundReader(SlideSet, int, ElementReader<E, P>) - Constructor for class org.nanes.slideset.dm.ColumnBoundReader
-
- ColumnBoundReader(E, ElementReader<E, P>, DataTypeIDService) - Constructor for class org.nanes.slideset.dm.ColumnBoundReader
-
- ColumnBoundWriter<E extends DataElement,P> - Class in org.nanes.slideset.dm
-
- ColumnBoundWriter<E extends DataElement,P> - Class in org.nanes.slideset.dm
-
- ColumnBoundWriter(SlideSet, int, ElementWriter<E, P>) - Constructor for class org.nanes.slideset.dm.ColumnBoundWriter
-
- ColumnBoundWriter(SlideSet, int, ElementWriter<E, P>) - Constructor for class org.nanes.slideset.dm.ColumnBoundWriter
-
- columnChoices - Variable in class org.nanes.slideset.script.PluginInputMatcher
-
- columnChoices - Variable in class org.nanes.slideset.script.PluginInputMatcher
-
- columnName - Variable in class org.nanes.slideset.dm.ColumnBoundReader
-
- columnName - Variable in class org.nanes.slideset.dm.ColumnBoundReader
-
- columnProperties - Variable in class org.nanes.slideset.SlideSet
-
Index of column properties:
elementClass - Name of DataElement subclass used
mimeType - MIME type used
name - Name associated with the column (required)
defaultPath - Default relative path for this column (relevant for links only)
defaultLinkPrefix - Prefix for generating default links (ex.
- columnProperties - Variable in class org.nanes.slideset.SlideSet
-
Index of column properties:
elementClass - Name of DataElement subclass used
mimeType - MIME type used
name - Name associated with the column (required)
defaultPath - Default relative path for this column (relevant for links only)
defaultLinkPrefix - Prefix for generating default links (ex.
- columns - Variable in class org.nanes.slideset.SlideSet
-
Columns in the SlideSet
- columns - Variable in class org.nanes.slideset.SlideSet
-
Columns in the SlideSet
- ColumnTypeException - Exception in org.nanes.slideset.ex
-
Signals the column types of a table do not match the expected types.
- ColumnTypeException - Exception in org.nanes.slideset.ex
-
Signals the column types of a table do not match the expected types.
- ColumnTypeException() - Constructor for exception org.nanes.slideset.ex.ColumnTypeException
-
- ColumnTypeException(String) - Constructor for exception org.nanes.slideset.ex.ColumnTypeException
-
- ColumnTypeException(Throwable) - Constructor for exception org.nanes.slideset.ex.ColumnTypeException
-
- ColumnTypeException(String, Throwable) - Constructor for exception org.nanes.slideset.ex.ColumnTypeException
-
- ColumnTypeException() - Constructor for exception org.nanes.slideset.ex.ColumnTypeException
-
- ColumnTypeException(String) - Constructor for exception org.nanes.slideset.ex.ColumnTypeException
-
- ColumnTypeException(Throwable) - Constructor for exception org.nanes.slideset.ex.ColumnTypeException
-
- ColumnTypeException(String, Throwable) - Constructor for exception org.nanes.slideset.ex.ColumnTypeException
-
- COLWIDTH - Static variable in class org.nanes.slideset.ui.SlideSetViewer
-
- COLWIDTH - Static variable in class org.nanes.slideset.ui.SlideSetViewer
-
- commandFinderPanel - Variable in class org.nanes.slideset.ui.CommandPicker
-
- commandFinderPanel - Variable in class org.nanes.slideset.ui.CommandPicker
-
- CommandPicker - Class in org.nanes.slideset.ui
-
Dialog box to select a recognized ImageJ command
- CommandPicker - Class in org.nanes.slideset.ui
-
Dialog box to select a recognized ImageJ command
- CommandPicker(Context) - Constructor for class org.nanes.slideset.ui.CommandPicker
-
- CommandPicker(Context) - Constructor for class org.nanes.slideset.ui.CommandPicker
-
- commandService - Variable in class org.nanes.slideset.ui.CommandPicker
-
- commandService - Variable in class org.nanes.slideset.ui.CommandPicker
-
- CommandSkeletonService - Class in org.nanes.slideset.io
-
Writes
CommandTemplate
data to an XML file to create a command skeleton and generates
CommandTemplate
s from saved command skeleton XML.
- CommandSkeletonService - Class in org.nanes.slideset.io
-
Writes
CommandTemplate
data to an XML file to create a command skeleton and generates
CommandTemplate
s from saved command skeleton XML.
- CommandSkeletonService() - Constructor for class org.nanes.slideset.io.CommandSkeletonService
-
- CommandSkeletonService() - Constructor for class org.nanes.slideset.io.CommandSkeletonService
-
- CommandSkeletonService.CommandTemplateInputPicker - Class in org.nanes.slideset.io
-
- CommandSkeletonService.CommandTemplateInputPicker - Class in org.nanes.slideset.io
-
- CommandSkeletonService.CommandTemplateOutputPicker - Class in org.nanes.slideset.io
-
- CommandSkeletonService.CommandTemplateOutputPicker - Class in org.nanes.slideset.io
-
- CommandTemplate - Class in org.nanes.slideset.dm
-
- CommandTemplate - Class in org.nanes.slideset.dm
-
- CommandTemplate() - Constructor for class org.nanes.slideset.dm.CommandTemplate
-
- CommandTemplate(XMLStreamReader) - Constructor for class org.nanes.slideset.dm.CommandTemplate
-
- CommandTemplate() - Constructor for class org.nanes.slideset.dm.CommandTemplate
-
- CommandTemplate(XMLStreamReader) - Constructor for class org.nanes.slideset.dm.CommandTemplate
-
- commandTemplate - Variable in class org.nanes.slideset.SlideSet
-
Command template data
- commandTemplate - Variable in class org.nanes.slideset.SlideSet
-
Command template data
- CommandTemplateInputPicker(CommandTemplate) - Constructor for class org.nanes.slideset.io.CommandSkeletonService.CommandTemplateInputPicker
-
- CommandTemplateInputPicker(CommandTemplate) - Constructor for class org.nanes.slideset.io.CommandSkeletonService.CommandTemplateInputPicker
-
- CommandTemplateOutputPicker(CommandTemplate) - Constructor for class org.nanes.slideset.io.CommandSkeletonService.CommandTemplateOutputPicker
-
- CommandTemplateOutputPicker(CommandTemplate) - Constructor for class org.nanes.slideset.io.CommandSkeletonService.CommandTemplateOutputPicker
-
- computeBrightnessContrast() - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
Computes brightness and contrast from min and max.
- computeBrightnessContrast() - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
Computes brightness and contrast from min and max.
- computeDataMinMax(RandomAccessibleInterval<? extends RealType<?>>) - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- computeDataMinMax(RandomAccessibleInterval<? extends RealType<?>>) - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- computeInitialMinMax() - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- computeInitialMinMax() - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- computeMinMax() - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
Computes min and max from brightness and contrast.
- computeMinMax() - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
Computes min and max from brightness and contrast.
- concat(double[], double[]) - Method in class org.nanes.slideset.pi.UnmixAbsorbance
-
Concatenate two vectors
- concat(double[], double[]) - Method in class org.nanes.slideset.pi.UnmixAbsorbance
-
Concatenate two vectors
- constant - Variable in class org.nanes.slideset.dm.ColumnBoundReader
-
- constant - Variable in class org.nanes.slideset.dm.ColumnBoundReader
-
- constantChoices - Variable in class org.nanes.slideset.script.PluginInputMatcher
-
- constantChoices - Variable in class org.nanes.slideset.script.PluginInputMatcher
-
- constants - Variable in class org.nanes.slideset.script.PluginInputMatcher
-
- constants - Variable in class org.nanes.slideset.script.PluginInputMatcher
-
- constantValOptions - Variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
The appropriate values menu buttons
- constantValOptions - Variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
The appropriate values menu buttons
- constantVals - Variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
The constant value fields
- constantVals - Variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
The constant value fields
- context - Variable in class org.nanes.slideset.pi.CreateMask
-
- context - Variable in class org.nanes.slideset.pi.CreateMask
-
- context - Variable in class org.nanes.slideset.pi.CreateMaskMulti
-
- context - Variable in class org.nanes.slideset.pi.CreateMaskMulti
-
- context - Variable in class org.nanes.slideset.pi.FindMaxima
-
- context - Variable in class org.nanes.slideset.pi.FindMaxima
-
- context - Variable in class org.nanes.slideset.pi.PointsTable
-
- context - Variable in class org.nanes.slideset.pi.PointsTable
-
- context - Variable in class org.nanes.slideset.pi.Reslice
-
- context - Variable in class org.nanes.slideset.pi.Reslice
-
- context - Variable in class org.nanes.slideset.pi.UnmixAbsorbance
-
- context - Variable in class org.nanes.slideset.pi.UnmixAbsorbance
-
- context - Variable in class org.nanes.slideset.pi.ZProject
-
- context - Variable in class org.nanes.slideset.pi.ZProject
-
- context - Variable in class org.nanes.slideset.ui.CommandPicker
-
- context - Variable in class org.nanes.slideset.ui.CommandPicker
-
- contrast - Variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- contrast - Variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- convertColumn(int, Class<? extends DataElement<?>>, String) - Method in class org.nanes.slideset.SlideSet
-
Convert the data type stored in a column.
- convertColumn(int, Class<? extends DataElement<?>>, String) - Method in class org.nanes.slideset.SlideSet
-
Convert the data type stored in a column.
- correlate(Float[], Float[]) - Method in class org.nanes.slideset.pi.Correlation
-
- correlate(Float[], Float[]) - Method in class org.nanes.slideset.pi.Correlation
-
- Correlation - Class in org.nanes.slideset.pi
-
- Correlation - Class in org.nanes.slideset.pi
-
- Correlation() - Constructor for class org.nanes.slideset.pi.Correlation
-
- Correlation() - Constructor for class org.nanes.slideset.pi.Correlation
-
- CountIntersections - Class in org.nanes.slideset.pi
-
Count intersections between ROI borders and a binary mask
- CountIntersections - Class in org.nanes.slideset.pi
-
Count intersections between ROI borders and a binary mask
- CountIntersections() - Constructor for class org.nanes.slideset.pi.CountIntersections
-
- CountIntersections() - Constructor for class org.nanes.slideset.pi.CountIntersections
-
- createImageWindow() - Method in class org.nanes.slideset.ui.RoiEditor
-
Create the image window
- createImageWindow() - Method in class org.nanes.slideset.ui.RoiEditor
-
Create the image window
- CreateMask - Class in org.nanes.slideset.pi
-
Generate a mask image from an ROI set.
- CreateMask - Class in org.nanes.slideset.pi
-
Generate a mask image from an ROI set.
- CreateMask() - Constructor for class org.nanes.slideset.pi.CreateMask
-
- CreateMask() - Constructor for class org.nanes.slideset.pi.CreateMask
-
- CreateMaskMulti - Class in org.nanes.slideset.pi
-
Generate a mask image from an ROI set, with each ROI labeled individually.
- CreateMaskMulti - Class in org.nanes.slideset.pi
-
Generate a mask image from an ROI set, with each ROI labeled individually.
- CreateMaskMulti() - Constructor for class org.nanes.slideset.pi.CreateMaskMulti
-
- CreateMaskMulti() - Constructor for class org.nanes.slideset.pi.CreateMaskMulti
-
- createOutputStack(ImagePlus, ImageProcessor) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- createOutputStack(ImagePlus, ImageProcessor) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- createRoiSet() - Method in class org.nanes.slideset.ui.RoiEditor
-
Create a new set of overlays (ROIs)
- createRoiSet() - Method in class org.nanes.slideset.ui.RoiEditor
-
Create a new set of overlays (ROIs)
- createRoiSet() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Create a new set of ROIs and add it as a new column in the data table.
- createRoiSet() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Create a new set of ROIs and add it as a new column in the data table.
- creationParams - Variable in class org.nanes.slideset.SlideSet
-
The input parameters used in the creation of this SlideSet
- creationParams - Variable in class org.nanes.slideset.SlideSet
-
The input parameters used in the creation of this SlideSet
- cs - Variable in class org.nanes.slideset.dm.read.ImageFileToDatasetReader
-
- cs - Variable in class org.nanes.slideset.dm.read.ImageFileToDatasetReader
-
- cs - Variable in class org.nanes.slideset.pi.SlideSetPluginLoader
-
- cs - Variable in class org.nanes.slideset.pi.SlideSetPluginLoader
-
- csvs - Variable in class org.nanes.slideset.script.SlideSetScript
-
- csvs - Variable in class org.nanes.slideset.script.SlideSetScript
-
- csvs - Variable in class org.nanes.slideset.ui.SlideSetLauncher
-
- csvs - Variable in class org.nanes.slideset.ui.SlideSetLauncher
-
- CSVService - Class in org.nanes.slideset.io
-
Writes SlideSet
data as a CSV file.
- CSVService - Class in org.nanes.slideset.io
-
Writes SlideSet
data as a CSV file.
- CSVService() - Constructor for class org.nanes.slideset.io.CSVService
-
- CSVService() - Constructor for class org.nanes.slideset.io.CSVService
-
- ct - Variable in class org.nanes.slideset.io.CommandSkeletonService.CommandTemplateInputPicker
-
- ct - Variable in class org.nanes.slideset.io.CommandSkeletonService.CommandTemplateInputPicker
-
- ct - Variable in class org.nanes.slideset.io.CommandSkeletonService.CommandTemplateOutputPicker
-
- ct - Variable in class org.nanes.slideset.io.CommandSkeletonService.CommandTemplateOutputPicker
-
- curImage - Variable in class org.nanes.slideset.ui.RoiEditor
-
Current image index
- curImage - Variable in class org.nanes.slideset.ui.RoiEditor
-
Current image index
- curImage - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
Current image index
- curImage - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
Current image index
- curImageSet - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
Current image set index
- curImageSet - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
Current image set index
- curRoiSet - Variable in class org.nanes.slideset.ui.RoiEditor
-
Current ROI set index
- curRoiSet - Variable in class org.nanes.slideset.ui.RoiEditor
-
Current ROI set index
- curRoiSet - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
Current ROI set index
- curRoiSet - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
Current ROI set index
- customLinkDirs - Variable in class org.nanes.slideset.script.PluginOutputMatcher
-
- customLinkDirs - Variable in class org.nanes.slideset.script.PluginOutputMatcher
-
- customLinkExts - Variable in class org.nanes.slideset.script.PluginOutputMatcher
-
- customLinkExts - Variable in class org.nanes.slideset.script.PluginOutputMatcher
-
- customLinkPres - Variable in class org.nanes.slideset.script.PluginOutputMatcher
-
- customLinkPres - Variable in class org.nanes.slideset.script.PluginOutputMatcher
-
- customTypes - Variable in class org.nanes.slideset.script.PluginOutputMatcher
-
- customTypes - Variable in class org.nanes.slideset.script.PluginOutputMatcher
-
- d2s(double) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- d2s(double) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- data - Variable in class org.nanes.slideset.dm.ColumnBoundReader
-
- data - Variable in class org.nanes.slideset.dm.ColumnBoundReader
-
- data - Variable in class org.nanes.slideset.dm.ColumnBoundWriter
-
- data - Variable in class org.nanes.slideset.dm.ColumnBoundWriter
-
- data - Variable in class org.nanes.slideset.ui.NanoHTTPd.Response
-
Data of the response, may be null.
- data - Variable in class org.nanes.slideset.ui.NanoHTTPd.Response
-
Data of the response, may be null.
- data - Variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
- data - Variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
- data - Variable in class org.nanes.slideset.ui.SlideSetViewer
-
- data - Variable in class org.nanes.slideset.ui.SlideSetViewer
-
- DataElement<T> - Class in org.nanes.slideset.dm
-
Basic element of data stored in
SlideSet
tables.
- DataElement<T> - Class in org.nanes.slideset.dm
-
Basic element of data stored in
SlideSet
tables.
- DataElement(T) - Constructor for class org.nanes.slideset.dm.DataElement
-
- DataElement(T) - Constructor for class org.nanes.slideset.dm.DataElement
-
- dataElement - Variable in class org.nanes.slideset.dm.DataTypeIDService.DataElementRecord
-
- dataElement - Variable in class org.nanes.slideset.dm.DataTypeIDService.DataElementRecord
-
- dataElementIndex - Variable in class org.nanes.slideset.dm.DataTypeIDService
-
- dataElementIndex - Variable in class org.nanes.slideset.dm.DataTypeIDService
-
- DataElementMetadata - Annotation Type in org.nanes.slideset.dm
-
Annotation type containing metadata for
DataElement
classes.
- DataElementMetadata - Annotation Type in org.nanes.slideset.dm
-
Annotation type containing metadata for
DataElement
classes.
- DataElementRecord(Class<? extends DataElement<T>>, String, Class<T>, boolean) - Constructor for class org.nanes.slideset.dm.DataTypeIDService.DataElementRecord
-
- DataElementRecord(Class<? extends DataElement<T>>, String, Class<T>, boolean) - Constructor for class org.nanes.slideset.dm.DataTypeIDService.DataElementRecord
-
- dataMax - Variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
The minimum and maximum values of the data itself.
- dataMax - Variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
The minimum and maximum values of the data itself.
- dataMin - Variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
The minimum and maximum values of the data itself.
- dataMin - Variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
The minimum and maximum values of the data itself.
- DatasetToImageFileWriter - Class in org.nanes.slideset.dm.write
-
- DatasetToImageFileWriter - Class in org.nanes.slideset.dm.write
-
- DatasetToImageFileWriter() - Constructor for class org.nanes.slideset.dm.write.DatasetToImageFileWriter
-
- DatasetToImageFileWriter() - Constructor for class org.nanes.slideset.dm.write.DatasetToImageFileWriter
-
- DatasetToPngFileWriter - Class in org.nanes.slideset.dm.write
-
- DatasetToPngFileWriter - Class in org.nanes.slideset.dm.write
-
- DatasetToPngFileWriter() - Constructor for class org.nanes.slideset.dm.write.DatasetToPngFileWriter
-
- DatasetToPngFileWriter() - Constructor for class org.nanes.slideset.dm.write.DatasetToPngFileWriter
-
- DataTypeIDService - Class in org.nanes.slideset.dm
-
Linking Slide Set tables to commands
- DataTypeIDService - Class in org.nanes.slideset.dm
-
Linking Slide Set tables to commands
- DataTypeIDService(ImageJ) - Constructor for class org.nanes.slideset.dm.DataTypeIDService
-
- DataTypeIDService(ImageJ) - Constructor for class org.nanes.slideset.dm.DataTypeIDService
-
- DataTypeIDService.DataElementRecord<T> - Class in org.nanes.slideset.dm
-
- DataTypeIDService.DataElementRecord<T> - Class in org.nanes.slideset.dm
-
- DataTypeIDService.ReaderRecord<E extends DataElement,P> - Class in org.nanes.slideset.dm
-
- DataTypeIDService.ReaderRecord<E extends DataElement,P> - Class in org.nanes.slideset.dm
-
- DataTypeIDService.WriterRecord<E extends DataElement,P> - Class in org.nanes.slideset.dm
-
- DataTypeIDService.WriterRecord<E extends DataElement,P> - Class in org.nanes.slideset.dm
-
- decodeHeader(BufferedReader, Properties, Properties, Properties) - Method in class org.nanes.slideset.ui.NanoHTTPd.HTTPSession
-
Decodes the sent headers and loads the data into
java Properties' key - value pairs
- decodeHeader(BufferedReader, Properties, Properties, Properties) - Method in class org.nanes.slideset.ui.NanoHTTPd.HTTPSession
-
Decodes the sent headers and loads the data into
java Properties' key - value pairs
- decodeMultipartData(String, byte[], BufferedReader, Properties, Properties) - Method in class org.nanes.slideset.ui.NanoHTTPd.HTTPSession
-
Decodes the Multipart Body data and put it
into java Properties' key - value pairs.
- decodeMultipartData(String, byte[], BufferedReader, Properties, Properties) - Method in class org.nanes.slideset.ui.NanoHTTPd.HTTPSession
-
Decodes the Multipart Body data and put it
into java Properties' key - value pairs.
- decodeParms(String, Properties) - Method in class org.nanes.slideset.ui.NanoHTTPd.HTTPSession
-
Decodes parameters in percent-encoded URI-format
( e.g.
- decodeParms(String, Properties) - Method in class org.nanes.slideset.ui.NanoHTTPd.HTTPSession
-
Decodes parameters in percent-encoded URI-format
( e.g.
- decodePercent(String) - Method in class org.nanes.slideset.ui.NanoHTTPd.HTTPSession
-
Decodes the percent encoding scheme.
- decodePercent(String) - Method in class org.nanes.slideset.ui.NanoHTTPd.HTTPSession
-
Decodes the percent encoding scheme.
- defaultButton - Variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- defaultButton - Variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- DefaultPathNotSetException - Exception in org.nanes.slideset.ex
-
Indicates that a new link cannot be generated because the default link
path is not set in the
column properties
- DefaultPathNotSetException - Exception in org.nanes.slideset.ex
-
Indicates that a new link cannot be generated because the default link
path is not set in the
column properties
- DefaultPathNotSetException() - Constructor for exception org.nanes.slideset.ex.DefaultPathNotSetException
-
Creates a new instance of
DefaultPathNotSetException
without detail message.
- DefaultPathNotSetException(String) - Constructor for exception org.nanes.slideset.ex.DefaultPathNotSetException
-
Constructs an instance of
DefaultPathNotSetException
with the specified detail message.
- DefaultPathNotSetException(Throwable) - Constructor for exception org.nanes.slideset.ex.DefaultPathNotSetException
-
- DefaultPathNotSetException(String, Throwable) - Constructor for exception org.nanes.slideset.ex.DefaultPathNotSetException
-
- DefaultPathNotSetException() - Constructor for exception org.nanes.slideset.ex.DefaultPathNotSetException
-
Creates a new instance of
DefaultPathNotSetException
without detail message.
- DefaultPathNotSetException(String) - Constructor for exception org.nanes.slideset.ex.DefaultPathNotSetException
-
Constructs an instance of
DefaultPathNotSetException
with the specified detail message.
- DefaultPathNotSetException(Throwable) - Constructor for exception org.nanes.slideset.ex.DefaultPathNotSetException
-
- DefaultPathNotSetException(String, Throwable) - Constructor for exception org.nanes.slideset.ex.DefaultPathNotSetException
-
- deleteTable() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Delete a table
- deleteTable() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Delete a table
- dialogReturnValue - Variable in class org.nanes.slideset.ui.CommandPicker
-
- dialogReturnValue - Variable in class org.nanes.slideset.ui.CommandPicker
-
- difw - Variable in class org.nanes.slideset.dm.write.ImageDisplayToImageFileWriter
-
- difw - Variable in class org.nanes.slideset.dm.write.ImageDisplayToImageFileWriter
-
- dil - Variable in class org.nanes.slideset.pi.CountIntersections
-
- dil - Variable in class org.nanes.slideset.pi.CountIntersections
-
- dir - Variable in class org.nanes.slideset.SlideSet
-
Working directory of this SlideSet
- dir - Variable in class org.nanes.slideset.SlideSet
-
Working directory of this SlideSet
- dir - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
The default link directory field
- dir - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
The default link directory field
- displayMode - Variable in class org.nanes.slideset.ui.RoiEditor
-
- displayMode - Variable in class org.nanes.slideset.ui.RoiEditor
-
- displayMode - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- displayMode - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- distance(double[], double[]) - Static method in class org.nanes.slideset.pi.RoiUtils
-
Compute the linear distance between two points.
- distance(double[], double[]) - Static method in class org.nanes.slideset.pi.RoiUtils
-
Compute the linear distance between two points.
- distanceFromLine(double[], double[], double[]) - Static method in class org.nanes.slideset.pi.RoiUtils
-
Compute the distance of point P
from
the line defined by points A
and B
.
- distanceFromLine(double[], double[], double[]) - Static method in class org.nanes.slideset.pi.RoiUtils
-
Compute the distance of point P
from
the line defined by points A
and B
.
- distanceFromSegment(double[], double[], double[]) - Static method in class org.nanes.slideset.pi.RoiUtils
-
Compute the distance of point P
from the
line segment bounded by points A
and B
.
- distanceFromSegment(double[], double[], double[]) - Static method in class org.nanes.slideset.pi.RoiUtils
-
Compute the distance of point P
from the
line segment bounded by points A
and B
.
- distanceSquared(double[], double[]) - Static method in class org.nanes.slideset.pi.RoiUtils
-
Compute the squared linear distance between two points.
- distanceSquared(double[], double[]) - Static method in class org.nanes.slideset.pi.RoiUtils
-
Compute the squared linear distance between two points.
- distSquared(double[], double[]) - Static method in class org.nanes.slideset.pi.ROILengths
-
- distSquared(double[], double[]) - Static method in class org.nanes.slideset.pi.ROILengths
-
- doComponentLayout() - Method in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
Finalize the dialog before display
- doComponentLayout() - Method in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
Finalize the dialog before display
- doIrregularSetup(Roi) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- doIrregularSetup(Roi) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- DoubleElement - Class in org.nanes.slideset.dm
-
DataElement
for storing numeric values
- DoubleElement - Class in org.nanes.slideset.dm
-
DataElement
for storing numeric values
- DoubleElement() - Constructor for class org.nanes.slideset.dm.DoubleElement
-
- DoubleElement(Double) - Constructor for class org.nanes.slideset.dm.DoubleElement
-
- DoubleElement() - Constructor for class org.nanes.slideset.dm.DoubleElement
-
- DoubleElement(Double) - Constructor for class org.nanes.slideset.dm.DoubleElement
-
- DoubleToDoubleReader - Class in org.nanes.slideset.dm.read
-
- DoubleToDoubleReader - Class in org.nanes.slideset.dm.read
-
- DoubleToDoubleReader() - Constructor for class org.nanes.slideset.dm.read.DoubleToDoubleReader
-
- DoubleToDoubleReader() - Constructor for class org.nanes.slideset.dm.read.DoubleToDoubleReader
-
- DoubleToDoubleWriter - Class in org.nanes.slideset.dm.write
-
- DoubleToDoubleWriter - Class in org.nanes.slideset.dm.write
-
- DoubleToDoubleWriter() - Constructor for class org.nanes.slideset.dm.write.DoubleToDoubleWriter
-
- DoubleToDoubleWriter() - Constructor for class org.nanes.slideset.dm.write.DoubleToDoubleWriter
-
- DoubleToFloatReader - Class in org.nanes.slideset.dm.read
-
- DoubleToFloatReader - Class in org.nanes.slideset.dm.read
-
- DoubleToFloatReader() - Constructor for class org.nanes.slideset.dm.read.DoubleToFloatReader
-
- DoubleToFloatReader() - Constructor for class org.nanes.slideset.dm.read.DoubleToFloatReader
-
- drawLine(double, double, double, double, ImagePlus) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- drawLine(double, double, double, double, ImagePlus) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- drawOverlays() - Method in class org.nanes.slideset.ui.RoiEditor
-
Draw appropriate overlays on the image
- drawOverlays() - Method in class org.nanes.slideset.ui.RoiEditor
-
Draw appropriate overlays on the image
- drawRois() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Draw ROIs on the image.
- drawRois() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Draw ROIs on the image.
- DropHandler(SlideSetLauncher) - Constructor for class org.nanes.slideset.ui.SlideSetLauncher.DropHandler
-
- DropHandler(SlideSetLauncher) - Constructor for class org.nanes.slideset.ui.SlideSetLauncher.DropHandler
-
- DropHandler() - Constructor for class org.nanes.slideset.ui.SlideSetViewer.DropHandler
-
- DropHandler() - Constructor for class org.nanes.slideset.ui.SlideSetViewer.DropHandler
-
- ds - Variable in class org.nanes.slideset.pi.BorderStats
-
- ds - Variable in class org.nanes.slideset.pi.BorderStats
-
- ds - Variable in class org.nanes.slideset.pi.BorderStatsNChan
-
- ds - Variable in class org.nanes.slideset.pi.BorderStatsNChan
-
- ds - Variable in class org.nanes.slideset.pi.Correlation
-
- ds - Variable in class org.nanes.slideset.pi.Correlation
-
- ds - Variable in class org.nanes.slideset.pi.Manders
-
- ds - Variable in class org.nanes.slideset.pi.Manders
-
- ds - Variable in class org.nanes.slideset.pi.OtsuSegmentation
-
- ds - Variable in class org.nanes.slideset.pi.OtsuSegmentation
-
- ds - Variable in class org.nanes.slideset.pi.RegionStats
-
- ds - Variable in class org.nanes.slideset.pi.RegionStats
-
- ds - Variable in class org.nanes.slideset.pi.RegionStatsNChan
-
- ds - Variable in class org.nanes.slideset.pi.RegionStatsNChan
-
- ds - Variable in class org.nanes.slideset.pi.RegionStatsNChanExclusion
-
- ds - Variable in class org.nanes.slideset.pi.RegionStatsNChanExclusion
-
- ds - Variable in class org.nanes.slideset.pi.ThresholdSegmentation
-
- ds - Variable in class org.nanes.slideset.pi.ThresholdSegmentation
-
- ds - Variable in class org.nanes.slideset.pi.UnmixAbsorbance
-
- ds - Variable in class org.nanes.slideset.pi.UnmixAbsorbance
-
- dtid - Variable in class org.nanes.slideset.io.XMLService
-
- dtid - Variable in class org.nanes.slideset.io.XMLService
-
- dtid - Variable in class org.nanes.slideset.pi.SlideSetPluginLoader
-
- dtid - Variable in class org.nanes.slideset.pi.SlideSetPluginLoader
-
- dtid - Variable in class org.nanes.slideset.SlideSet
-
DataTypeIDService reference
- dtid - Variable in class org.nanes.slideset.SlideSet
-
DataTypeIDService reference
- dtid - Variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
- dtid - Variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
- dtid - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- dtid - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- dtid - Variable in class org.nanes.slideset.ui.RoiEditor
-
- dtid - Variable in class org.nanes.slideset.ui.RoiEditor
-
- dtid - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- dtid - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- dtid - Variable in class org.nanes.slideset.ui.SlideSetLauncher
-
- dtid - Variable in class org.nanes.slideset.ui.SlideSetLauncher
-
- dtid - Variable in class org.nanes.slideset.ui.SlideSetViewer
-
- dtid - Variable in class org.nanes.slideset.ui.SlideSetViewer
-
- dtids - Variable in class org.nanes.slideset.script.SlideSetScript
-
- dtids - Variable in class org.nanes.slideset.script.SlideSetScript
-
- dx - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- dx - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- dy - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- dy - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- DynamicHelpResource - Class in org.nanes.slideset.ui
-
Dynamically generated resource for the
by the documentation server.
- DynamicHelpResource - Class in org.nanes.slideset.ui
-
Dynamically generated resource for the
by the documentation server.
- DynamicHelpResource() - Constructor for class org.nanes.slideset.ui.DynamicHelpResource
-
- DynamicHelpResource() - Constructor for class org.nanes.slideset.ui.DynamicHelpResource
-
- DynamicHelpResource.GeneratedResource - Class in org.nanes.slideset.ui
-
Generated dynamic resource
- DynamicHelpResource.GeneratedResource - Class in org.nanes.slideset.ui
-
Generated dynamic resource
- dynamicPages - Variable in class org.nanes.slideset.ui.JarHTTPd
-
Mapping of dynamically generated resources, indexed by relative URI
- dynamicPages - Variable in class org.nanes.slideset.ui.JarHTTPd
-
Mapping of dynamically generated resources, indexed by relative URI
- gap - Static variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
Padding
- gap - Static variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
Padding
- gap - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
Padding
- gap - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
Padding
- generateDefaultLinkPath(int, int) - Method in class org.nanes.slideset.SlideSet
-
Generate a default link path for a specified cell.
- generateDefaultLinkPath(int, int) - Method in class org.nanes.slideset.SlideSet
-
Generate a default link path for a specified cell.
- GeneratedResource(InputStream, int, String) - Constructor for class org.nanes.slideset.ui.DynamicHelpResource.GeneratedResource
-
- GeneratedResource(InputStream, int, String) - Constructor for class org.nanes.slideset.ui.DynamicHelpResource.GeneratedResource
-
- generateResource(String) - Method in class org.nanes.slideset.ui.DynamicHelpResource
-
Generate the dynamic resource
- generateResource(String) - Method in class org.nanes.slideset.ui.DynamicHelpResource
-
Generate the dynamic resource
- generateResource(String) - Method in class org.nanes.slideset.ui.HttpHelpLoader.AboutPage
-
- generateResource(String) - Method in class org.nanes.slideset.ui.HttpHelpLoader.AboutPage
-
- getAvailableMemory() - Method in class org.nanes.slideset.pi.SilentSlicer
-
- getAvailableMemory() - Method in class org.nanes.slideset.pi.SilentSlicer
-
- getBoundaryPositions(byte[], byte[]) - Method in class org.nanes.slideset.ui.NanoHTTPd.HTTPSession
-
Find the byte positions where multipart boundaries start.
- getBoundaryPositions(byte[], byte[]) - Method in class org.nanes.slideset.ui.NanoHTTPd.HTTPSession
-
Find the byte positions where multipart boundaries start.
- getBrightness() - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- getBrightness() - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- getChildren() - Method in class org.nanes.slideset.SlideSet
-
Get a list of this SlideSet
's children
- getChildren() - Method in class org.nanes.slideset.SlideSet
-
Get a list of this SlideSet
's children
- getColumnClass(int) - Method in class org.nanes.slideset.ui.SlideSetTableModel
-
- getColumnClass(int) - Method in class org.nanes.slideset.ui.SlideSetTableModel
-
- getColumnCount() - Method in class org.nanes.slideset.ui.SlideSetTableModel
-
- getColumnCount() - Method in class org.nanes.slideset.ui.SlideSetTableModel
-
- getColumnDefaultPath(int) - Method in class org.nanes.slideset.SlideSet
-
Get the default relative path associated with the column.
- getColumnDefaultPath(int) - Method in class org.nanes.slideset.SlideSet
-
Get the default relative path associated with the column.
- getColumnElementClass(int) - Method in class org.nanes.slideset.SlideSet
-
- getColumnElementClass(int) - Method in class org.nanes.slideset.SlideSet
-
- getColumnElementType(int) - Method in class org.nanes.slideset.SlideSet
-
- getColumnElementType(int) - Method in class org.nanes.slideset.SlideSet
-
- getColumnFromHeaderEvent(ActionEvent) - Method in class org.nanes.slideset.ui.SlideSetViewer
-
Find out which column header triggered a popup menu
- getColumnFromHeaderEvent(ActionEvent) - Method in class org.nanes.slideset.ui.SlideSetViewer
-
Find out which column header triggered a popup menu
- getColumnIndex(String) - Method in class org.nanes.slideset.SlideSet
-
Get the index of the first column with a matching name, or -1 if no such column
- getColumnIndex(String) - Method in class org.nanes.slideset.SlideSet
-
Get the index of the first column with a matching name, or -1 if no such column
- getColumnMimeType(int) - Method in class org.nanes.slideset.SlideSet
-
Get the column MIME type
- getColumnMimeType(int) - Method in class org.nanes.slideset.SlideSet
-
Get the column MIME type
- getColumnName() - Method in class org.nanes.slideset.dm.ColumnBoundReader
-
Get the human-readable label for the column
- getColumnName() - Method in class org.nanes.slideset.dm.ColumnBoundReader
-
Get the human-readable label for the column
- getColumnName(int) - Method in class org.nanes.slideset.SlideSet
-
Get the name of a column
- getColumnName(int) - Method in class org.nanes.slideset.SlideSet
-
Get the name of a column
- getColumnName(int) - Method in class org.nanes.slideset.ui.SlideSetTableModel
-
- getColumnName(int) - Method in class org.nanes.slideset.ui.SlideSetTableModel
-
- getColumnNum() - Method in class org.nanes.slideset.dm.ColumnBoundReader
-
Get the column index
- getColumnNum() - Method in class org.nanes.slideset.dm.ColumnBoundReader
-
Get the column index
- getColumnNum() - Method in class org.nanes.slideset.dm.ColumnBoundWriter
-
Get the column index
- getColumnNum() - Method in class org.nanes.slideset.dm.ColumnBoundWriter
-
Get the column index
- getColumnProperties(int) - Method in class org.nanes.slideset.SlideSet
-
Get the properties of a column
- getColumnProperties(int) - Method in class org.nanes.slideset.SlideSet
-
Get the properties of a column
- getColumnReadWritePairs(Class<?>, SlideSet, ArrayList<ColumnBoundReader>, ArrayList<ColumnBoundWriter>) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
- getColumnReadWritePairs(Class<?>, SlideSet, ArrayList<ColumnBoundReader>, ArrayList<ColumnBoundWriter>) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
- getColumnText(SlideSet, int) - Method in class org.nanes.slideset.script.SlideSetScript
-
Get the contents of a Slide Set table column
- getColumnText(SlideSet, String) - Method in class org.nanes.slideset.script.SlideSetScript
-
Get the contents of a Slide Set table column
- getColumnText(SlideSet, int) - Method in class org.nanes.slideset.script.SlideSetScript
-
Get the contents of a Slide Set table column
- getColumnText(SlideSet, String) - Method in class org.nanes.slideset.script.SlideSetScript
-
Get the contents of a Slide Set table column
- getColumnTypeName() - Method in class org.nanes.slideset.dm.ColumnBoundReader
-
Get a human-readable label for the column type
- getColumnTypeName() - Method in class org.nanes.slideset.dm.ColumnBoundReader
-
Get a human-readable label for the column type
- getColumnTypeName(int) - Method in class org.nanes.slideset.SlideSet
-
Get a human-readable name for the data type of a column.
- getColumnTypeName(int) - Method in class org.nanes.slideset.SlideSet
-
Get a human-readable name for the data type of a column.
- getColumnUnderlyingType(int) - Method in class org.nanes.slideset.SlideSet
-
Get the underlying type used to store data in a column.
- getColumnUnderlyingType(int) - Method in class org.nanes.slideset.SlideSet
-
Get the underlying type used to store data in a column.
- getCommandClass() - Method in class org.nanes.slideset.dm.CommandTemplate
-
Get the command class name
- getCommandClass() - Method in class org.nanes.slideset.dm.CommandTemplate
-
Get the command class name
- getCommandTemplate() - Method in class org.nanes.slideset.SlideSet
-
Get the command template data for this SlideSet
- getCommandTemplate() - Method in class org.nanes.slideset.SlideSet
-
Get the command template data for this SlideSet
- getCompatableColumnReaders(Class<?>, SlideSet) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
Get a list of
ColumnBoundReader
s that will read
data from the given table that are assignment-compatible with
the specified class.
- getCompatableColumnReaders(Class<?>, SlideSet) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
Get a list of
ColumnBoundReader
s that will read
data from the given table that are assignment-compatible with
the specified class.
- getCompatableReaders(Class<?>, ArrayList<Class<? extends ElementReader>>, ArrayList<String>, boolean) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
Get the list of
ElementReader
s that will
read to the specified type.
- getCompatableReaders(Class<?>, ArrayList<Class<? extends ElementReader>>, ArrayList<String>, boolean) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
Get the list of
ElementReader
s that will
read to the specified type.
- getCompatableWriters(Class<?>, ArrayList<Class<? extends ElementWriter>>, ArrayList<String>, ArrayList<String>) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
- getCompatableWriters(Class<?>, ArrayList<Class<? extends ElementWriter>>, ArrayList<String>, ArrayList<String>) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
- getContext() - Method in class org.nanes.slideset.SlideSet
-
Get the SciJava application Context
- getContext() - Method in class org.nanes.slideset.SlideSet
-
Get the SciJava application Context
- getContrast() - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- getContrast() - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- getCreationParams() - Method in class org.nanes.slideset.SlideSet
-
Get the creation parameters of this SlideSet
- getCreationParams() - Method in class org.nanes.slideset.SlideSet
-
Get the creation parameters of this SlideSet
- getDataElement(int, int) - Method in class org.nanes.slideset.SlideSet
-
- getDataElement(int, int) - Method in class org.nanes.slideset.SlideSet
-
- getDataTypeIDService() - Method in class org.nanes.slideset.script.SlideSetScript
-
- getDataTypeIDService() - Method in class org.nanes.slideset.script.SlideSetScript
-
- getDefaultLinkCount(int) - Method in class org.nanes.slideset.SlideSet
-
Get the counter for default links for a column.
- getDefaultLinkCount(int) - Method in class org.nanes.slideset.SlideSet
-
Get the counter for default links for a column.
- getDefaultLinkExtension(int) - Method in class org.nanes.slideset.SlideSet
-
Get the default link extension for a column.
- getDefaultLinkExtension(int) - Method in class org.nanes.slideset.SlideSet
-
Get the default link extension for a column.
- getDefaultLinkPrefix(int) - Method in class org.nanes.slideset.SlideSet
-
Get the prefix for default links for a column.
- getDefaultLinkPrefix(int) - Method in class org.nanes.slideset.SlideSet
-
Get the prefix for default links for a column.
- getElementTypes(boolean) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
- getElementTypes(boolean) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
- getFirstPathInstructionEnd(String) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Get the end index of the first path data instruction in pathData
.
- getFirstPathInstructionEnd(String) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Get the end index of the first path data instruction in pathData
.
- getFirstPathInstructionEnd(String) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Get the end index of the first path data instruction in pathData
.
- getFirstPathInstructionEnd(String) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Get the end index of the first path data instruction in pathData
.
- getFirstTransformEnd(String) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Get the index of the end of the first transform string in a
transform
attribute list.
- getFirstTransformEnd(String) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Get the index of the end of the first transform string in a
transform
attribute list.
- getFirstTransformEnd(String) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Get the index of the end of the first transform string in a
transform
attribute list.
- getFirstTransformEnd(String) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Get the index of the end of the first transform string in a
transform
attribute list.
- getHelp(String) - Method in interface org.nanes.slideset.ui.HelpLoader
-
- getHelp() - Method in interface org.nanes.slideset.ui.HelpLoader
-
- getHelp(String) - Method in interface org.nanes.slideset.ui.HelpLoader
-
- getHelp() - Method in interface org.nanes.slideset.ui.HelpLoader
-
- getHelp(String) - Method in class org.nanes.slideset.ui.HttpHelpLoader
-
Open a documentation page.
- getHelp() - Method in class org.nanes.slideset.ui.HttpHelpLoader
-
- getHelp(String) - Method in class org.nanes.slideset.ui.HttpHelpLoader
-
Open a documentation page.
- getHelp() - Method in class org.nanes.slideset.ui.HttpHelpLoader
-
- getHelp - Variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
Button to view the relevant documentation, if applicable
- getHelp - Variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
Button to view the relevant documentation, if applicable
- getHelp(String) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Load documentation in a web browser.
- getHelp(String) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Load documentation in a web browser.
- getImaegJ() - Method in class org.nanes.slideset.script.SlideSetScript
-
Get the ImageJ instance bound to this class
- getImaegJ() - Method in class org.nanes.slideset.script.SlideSetScript
-
Get the ImageJ instance bound to this class
- getImageNames() - Method in class org.nanes.slideset.ui.RoiEditor
-
Get the short names of image files to put in the list,
prefixed by the row number to avoid name duplications
which cause problems with DefaultComboBoxModel
.
- getImageNames() - Method in class org.nanes.slideset.ui.RoiEditor
-
Get the short names of image files to put in the list,
prefixed by the row number to avoid name duplications
which cause problems with DefaultComboBoxModel
.
- getImageNames() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Get the short names of image files to put in the list, prefixed by the
row number to avoid name duplications which cause problems with
DefaultComboBoxModel
.
- getImageNames() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Get the short names of image files to put in the list, prefixed by the
row number to avoid name duplications which cause problems with
DefaultComboBoxModel
.
- getImageSetNames() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Get the names of available image sets to put in the list, prefixed by the
row number to avoid name duplications which cause problems with
DefaultComboBoxModel
.
- getImageSetNames() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Get the names of available image sets to put in the list, prefixed by the
row number to avoid name duplications which cause problems with
DefaultComboBoxModel
.
- getInputChoices(ArrayList<Integer>, ArrayList<Object>) - Method in class org.nanes.slideset.dm.CommandTemplate
-
Get the command input choice parameters.
- getInputChoices(ArrayList<Integer>, ArrayList<Object>) - Method in class org.nanes.slideset.dm.CommandTemplate
-
Get the command input choice parameters.
- getInputChoices(ArrayList<Integer>, ArrayList<Object>) - Method in class org.nanes.slideset.io.CommandSkeletonService.CommandTemplateInputPicker
-
- getInputChoices(ArrayList<Integer>, ArrayList<Object>) - Method in class org.nanes.slideset.io.CommandSkeletonService.CommandTemplateInputPicker
-
- getInputChoices(ArrayList<Integer>, ArrayList<Object>) - Method in interface org.nanes.slideset.pi.PluginInputPicker
-
Get chosen options for assignment of each plugin
input value.
- getInputChoices(ArrayList<Integer>, ArrayList<Object>) - Method in interface org.nanes.slideset.pi.PluginInputPicker
-
Get chosen options for assignment of each plugin
input value.
- getInputChoices(ArrayList<Integer>, ArrayList<Object>) - Method in class org.nanes.slideset.script.PluginInputMatcher
-
- getInputChoices(ArrayList<Integer>, ArrayList<Object>) - Method in class org.nanes.slideset.script.PluginInputMatcher
-
- getInputChoices(ArrayList<Integer>, ArrayList<Object>) - Method in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
- getInputChoices(ArrayList<Integer>, ArrayList<Object>) - Method in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
- getIrregularProfile(Roi, ImageProcessor) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- getIrregularProfile(Roi, ImageProcessor) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- getItemText(int, int) - Method in class org.nanes.slideset.SlideSet
-
Get a text representation of an item, i.e.
- getItemText(int, int) - Method in class org.nanes.slideset.SlideSet
-
Get a text representation of an item, i.e.
- getLine(ImageProcessor, double, double, double, double, float[]) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- getLine(ImageProcessor, double, double, double, double, float[]) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- getMaximum() - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- getMaximum() - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- getMimeReadableName(String) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
Get the human-readable name of an MIME type, if
it is registered in the index.
- getMimeReadableName(String) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
Get the human-readable name of an MIME type, if
it is registered in the index.
- getMimeType() - Method in class org.nanes.slideset.dm.DataElement
-
Get the MIME type of this element
- getMimeType() - Method in class org.nanes.slideset.dm.DataElement
-
Get the MIME type of this element
- getMimeTypes() - Method in class org.nanes.slideset.dm.DataTypeIDService
-
Get a list of MIME types from the index
- getMimeTypes() - Method in class org.nanes.slideset.dm.DataTypeIDService
-
Get a list of MIME types from the index
- getMinimum() - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- getMinimum() - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- getMyJarPath() - Method in class org.nanes.slideset.ui.HttpHelpLoader.AboutPage
-
- getMyJarPath() - Method in class org.nanes.slideset.ui.HttpHelpLoader.AboutPage
-
- getName() - Method in class org.nanes.slideset.SlideSet
-
Get the name of this SlideSet
- getName() - Method in class org.nanes.slideset.SlideSet
-
Get the name of this SlideSet
- getNeighbors(long[], int, int) - Method in class org.nanes.slideset.pi.ThresholdSegmentation
-
Get the 4-connected neighborhood in the x-y plane
- getNeighbors(long[], int, int) - Method in class org.nanes.slideset.pi.ThresholdSegmentation
-
Get the 4-connected neighborhood in the x-y plane
- getNewColumnElement(int) - Method in class org.nanes.slideset.SlideSet
-
Generate a new
DataElement
appropriate
for the selected column.
- getNewColumnElement(int) - Method in class org.nanes.slideset.SlideSet
-
Generate a new
DataElement
appropriate
for the selected column.
- getNextPoint(long[], ArrayList<long[][]>) - Method in class org.nanes.slideset.pi.ThresholdSegmentation
-
Find the edge in set
with one point matching p
.
- getNextPoint(long[], ArrayList<long[][]>) - Method in class org.nanes.slideset.pi.ThresholdSegmentation
-
Find the edge in set
with one point matching p
.
- getNumCols() - Method in class org.nanes.slideset.SlideSet
-
Get the number of columns
- getNumCols() - Method in class org.nanes.slideset.SlideSet
-
Get the number of columns
- getNumResults(Map<String, Object>) - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
Checks to make sure that all results are either length 1
(i.e.
- getNumResults(Map<String, Object>) - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
Checks to make sure that all results are either length 1
(i.e.
- getNumRows() - Method in class org.nanes.slideset.SlideSet
-
Get the number of rows
- getNumRows() - Method in class org.nanes.slideset.SlideSet
-
Get the number of rows
- getOrthoLine(ImageProcessor, int, int, int, int, float[]) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- getOrthoLine(ImageProcessor, int, int, int, int, float[]) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- getOutputChoices(ArrayList<Integer>, ArrayList<Integer>, ArrayList<String>, ArrayList<String>, ArrayList<String>) - Method in class org.nanes.slideset.dm.CommandTemplate
-
Set the command output choices.
- getOutputChoices(ArrayList<Integer>, ArrayList<Integer>, ArrayList<String>, ArrayList<String>, ArrayList<String>) - Method in class org.nanes.slideset.dm.CommandTemplate
-
Set the command output choices.
- getOutputChoices(ArrayList<Integer>, ArrayList<Integer>, ArrayList<String>, ArrayList<String>, ArrayList<String>) - Method in class org.nanes.slideset.io.CommandSkeletonService.CommandTemplateOutputPicker
-
- getOutputChoices(ArrayList<Integer>, ArrayList<Integer>, ArrayList<String>, ArrayList<String>, ArrayList<String>) - Method in class org.nanes.slideset.io.CommandSkeletonService.CommandTemplateOutputPicker
-
- getOutputChoices(ArrayList<Integer>, ArrayList<Integer>, ArrayList<String>, ArrayList<String>, ArrayList<String>) - Method in interface org.nanes.slideset.pi.PluginOutputPicker
-
Get chosen options for handling of each plugin output
value, as well as fields from the parent table
that should be copied to the results table.
- getOutputChoices(ArrayList<Integer>, ArrayList<Integer>, ArrayList<String>, ArrayList<String>, ArrayList<String>) - Method in interface org.nanes.slideset.pi.PluginOutputPicker
-
Get chosen options for handling of each plugin output
value, as well as fields from the parent table
that should be copied to the results table.
- getOutputChoices(ArrayList<Integer>, ArrayList<Integer>, ArrayList<String>, ArrayList<String>, ArrayList<String>) - Method in class org.nanes.slideset.script.PluginOutputMatcher
-
- getOutputChoices(ArrayList<Integer>, ArrayList<Integer>, ArrayList<String>, ArrayList<String>, ArrayList<String>) - Method in class org.nanes.slideset.script.PluginOutputMatcher
-
- getOutputChoices(ArrayList<Integer>, ArrayList<Integer>, ArrayList<String>, ArrayList<String>, ArrayList<String>) - Method in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- getOutputChoices(ArrayList<Integer>, ArrayList<Integer>, ArrayList<String>, ArrayList<String>, ArrayList<String>) - Method in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- getOutputStackSize(double, double, int) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- getOutputStackSize(double, double, int) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- getOwner() - Method in class org.nanes.slideset.dm.DataElement
-
Get the SlideSet
table which owns this element
- getOwner() - Method in class org.nanes.slideset.dm.DataElement
-
Get the SlideSet
table which owns this element
- getParent() - Method in class org.nanes.slideset.SlideSet
-
Get the parent of this SlideSet
- getParent() - Method in class org.nanes.slideset.SlideSet
-
Get the parent of this SlideSet
- getPath() - Method in class org.nanes.slideset.pi.WekaClassifierFile
-
- getPath() - Method in class org.nanes.slideset.pi.WekaClassifierFile
-
- getPlanarAxes(AbstractOverlay, int[]) - Method in class org.nanes.slideset.dm.write.AbstractOverlaysToSVGFileWriter
-
Get the X and Y axis indeces for an overlay
- getPlanarAxes(AbstractOverlay, int[]) - Method in class org.nanes.slideset.dm.write.AbstractOverlaysToSVGFileWriter
-
Get the X and Y axis indeces for an overlay
- getPluginInfo() - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
- getPluginInfo() - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
- getPluginMenuPaths() - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
Get a list of the plugin paths, i.e.
- getPluginMenuPaths() - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
Get a list of the plugin paths, i.e.
- getPort() - Method in class org.nanes.slideset.ui.JarHTTPd
-
Get the port on which the server is listening.
- getPort() - Method in class org.nanes.slideset.ui.JarHTTPd
-
Get the port on which the server is listening.
- getPrimitiveWrapper(Class<?>) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
Returns the wrapper class for a primitive type.
- getPrimitiveWrapper(Class<?>) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
Returns the wrapper class for a primitive type.
- getReadableElementType(Class<? extends DataElement>, String) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
Get a human-readable name for a
DataElement
type—
MIME type pair
- getReadableElementType(Class<? extends DataElement>, String) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
Get a human-readable name for a
DataElement
type—
MIME type pair
- getReaderElementType(Class<? extends ElementReader>) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
- getReaderElementType(Class<? extends ElementReader>) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
- getReaderMimeTypes(Class<? extends ElementReader>) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
Get the list of MIME types that can be read by
an
ElementReader
type.
- getReaderMimeTypes(Class<? extends ElementReader>) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
Get the list of MIME types that can be read by
an
ElementReader
type.
- getReaders(Iterable<ModuleItem<?>>, SlideSet, PluginInputPicker, String, CommandTemplate) - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
- getReaders(Iterable<ModuleItem<?>>, SlideSet, PluginInputPicker, String, CommandTemplate) - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
- getReaderUnderlyingType(Class<? extends ElementReader>) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
- getReaderUnderlyingType(Class<? extends ElementReader>) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
- getRealType() - Method in class org.nanes.slideset.dm.AbstractOverlaysAlias
-
- getRealType() - Method in class org.nanes.slideset.dm.AbstractOverlaysAlias
-
- getRealType() - Method in class org.nanes.slideset.dm.RoisAlias
-
- getRealType() - Method in class org.nanes.slideset.dm.RoisAlias
-
- getRealType() - Method in interface org.nanes.slideset.dm.TypeAlias
-
The real type referenced by this alias type
- getRealType() - Method in interface org.nanes.slideset.dm.TypeAlias
-
The real type referenced by this alias type
- getRoiLenth(AbstractOverlay) - Static method in class org.nanes.slideset.pi.ROILengths
-
Calculate the length, in pixels, of an AbstractOverlay
border.
- getRoiLenth(AbstractOverlay) - Static method in class org.nanes.slideset.pi.ROILengths
-
Calculate the length, in pixels, of an AbstractOverlay
border.
- getRoiSetNames() - Method in class org.nanes.slideset.ui.RoiEditor
-
Get the names of available ROI sets to put in the list,
prefixed by the row number to avoid name duplications
which cause problems with DefaultComboBoxModel
.
- getRoiSetNames() - Method in class org.nanes.slideset.ui.RoiEditor
-
Get the names of available ROI sets to put in the list,
prefixed by the row number to avoid name duplications
which cause problems with DefaultComboBoxModel
.
- getRoiSetNames() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Get the names of available ROI sets to put in the list, prefixed by the
row number to avoid name duplications which cause problems with
DefaultComboBoxModel
.
- getRoiSetNames() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Get the names of available ROI sets to put in the list, prefixed by the
row number to avoid name duplications which cause problems with
DefaultComboBoxModel
.
- getRowCount() - Method in class org.nanes.slideset.ui.SlideSetTableModel
-
- getRowCount() - Method in class org.nanes.slideset.ui.SlideSetTableModel
-
- getSelectedCommand() - Method in class org.nanes.slideset.ui.CommandPicker
-
- getSelectedCommand() - Method in class org.nanes.slideset.ui.CommandPicker
-
- getSelectedSlideSets() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Get a list of the SlideSet
s selected in the tree
- getSelectedSlideSets() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Get a list of the SlideSet
s selected in the tree
- getSize(double, double, int) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- getSize(double, double, int) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- getSlice(ImagePlus, double, double, double, double, String) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- getSlice(ImagePlus, double, double, double, double, String) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- getSlideSetPluginLoader() - Method in class org.nanes.slideset.script.SlideSetScript
-
- getSlideSetPluginLoader() - Method in class org.nanes.slideset.script.SlideSetScript
-
- getTableForWriters(ArrayList<String>, ArrayList<Class<? extends ElementWriter>>, SlideSet, ArrayList<ColumnBoundWriter>) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
Create a table with column types matching the specified list
of
ElementWriter
classes.
- getTableForWriters(ArrayList<String>, ArrayList<Class<? extends ElementWriter>>, SlideSet, ArrayList<ColumnBoundWriter>) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
Create a table with column types matching the specified list
of
ElementWriter
classes.
- getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class org.nanes.slideset.ui.SlideSetTreeRenderer
-
- getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class org.nanes.slideset.ui.SlideSetTreeRenderer
-
- getTreeRoot() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
- getTreeRoot() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
- getTypeAlias(Class<?>) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
Replace a
TypeAlias
type with it's 'real' type.
- getTypeAlias(Class<?>) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
Replace a
TypeAlias
type with it's 'real' type.
- getUnderlying() - Method in class org.nanes.slideset.dm.DataElement
-
Get this element's "underlying" value
- getUnderlying() - Method in class org.nanes.slideset.dm.DataElement
-
Get this element's "underlying" value
- getUnderlying(int, int) - Method in class org.nanes.slideset.SlideSet
-
Get an item as the underlying data object, i.e.
- getUnderlying(int, int) - Method in class org.nanes.slideset.SlideSet
-
Get an item as the underlying data object, i.e.
- getUnderlyingText() - Method in class org.nanes.slideset.dm.BooleanElement
-
- getUnderlyingText() - Method in class org.nanes.slideset.dm.BooleanElement
-
- getUnderlyingText() - Method in class org.nanes.slideset.dm.DataElement
-
Get a String
representation of this
element's "underlying" value
- getUnderlyingText() - Method in class org.nanes.slideset.dm.DataElement
-
Get a String
representation of this
element's "underlying" value
- getUnderlyingText() - Method in class org.nanes.slideset.dm.DoubleElement
-
- getUnderlyingText() - Method in class org.nanes.slideset.dm.DoubleElement
-
- getUnderlyingText() - Method in class org.nanes.slideset.dm.FileLinkElement
-
- getUnderlyingText() - Method in class org.nanes.slideset.dm.FileLinkElement
-
- getUnderlyingText() - Method in class org.nanes.slideset.dm.IntegerElement
-
- getUnderlyingText() - Method in class org.nanes.slideset.dm.IntegerElement
-
- getUnderlyingText() - Method in class org.nanes.slideset.dm.StringElement
-
- getUnderlyingText() - Method in class org.nanes.slideset.dm.StringElement
-
- getUnfilledInputs(Module, Iterable<ModuleItem<?>>) - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
Get a list of inputs that have not been filled
- getUnfilledInputs(Module, Iterable<ModuleItem<?>>) - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
Get a list of inputs that have not been filled
- getValueAt(int, int) - Method in class org.nanes.slideset.ui.SlideSetTableModel
-
- getValueAt(int, int) - Method in class org.nanes.slideset.ui.SlideSetTableModel
-
- getValuesOnLine(double, double, double, double, double) - Method in class org.nanes.slideset.pi.CountIntersections
-
- getValuesOnLine(double, double, double, double, double) - Method in class org.nanes.slideset.pi.CountIntersections
-
- getView() - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- getView() - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- getWorkingDirectory() - Method in class org.nanes.slideset.SlideSet
-
Get the working directory of this SlideSet
- getWorkingDirectory() - Method in class org.nanes.slideset.SlideSet
-
Get the working directory of this SlideSet
- getWriter() - Method in class org.nanes.slideset.dm.ColumnBoundWriter
-
Get the bound writer
- getWriter() - Method in class org.nanes.slideset.dm.ColumnBoundWriter
-
Get the bound writer
- getWriterElementType(Class<? extends ElementWriter>) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
- getWriterElementType(Class<? extends ElementWriter>) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
- getWriters(ArrayList<ModuleItem<?>>, boolean, PluginOutputPicker, ArrayList<ColumnBoundWriter>, SlideSet, String[], ArrayList<Integer>, ArrayList<String>, ArrayList<String>, ArrayList<String>, CommandTemplate) - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
Prepare for plugin results be creating a results table
and appropriate
ColumnBoundWriter
s to write the
results to it
- getWriters(ArrayList<ModuleItem<?>>, boolean, PluginOutputPicker, ArrayList<ColumnBoundWriter>, SlideSet, String[], ArrayList<Integer>, ArrayList<String>, ArrayList<String>, ArrayList<String>, CommandTemplate) - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
Prepare for plugin results be creating a results table
and appropriate
ColumnBoundWriter
s to write the
results to it
- getXMLService() - Method in class org.nanes.slideset.script.SlideSetScript
-
Get the
XMLService
for reading and writing Slide Set data files.
- getXMLService() - Method in class org.nanes.slideset.script.SlideSetScript
-
Get the
XMLService
for reading and writing Slide Set data files.
- GIF - Static variable in class org.nanes.slideset.dm.MIME
-
- GIF - Static variable in class org.nanes.slideset.dm.MIME
-
- gLength - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- gLength - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- GLOBAL - Static variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- GLOBAL - Static variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- gmtFrmt - Static variable in class org.nanes.slideset.ui.NanoHTTPd
-
GMT date formatter
- gmtFrmt - Static variable in class org.nanes.slideset.ui.NanoHTTPd
-
GMT date formatter
- goImageBack - Variable in class org.nanes.slideset.ui.RoiEditor
-
- goImageBack - Variable in class org.nanes.slideset.ui.RoiEditor
-
- goImageBack - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- goImageBack - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- goImageNext - Variable in class org.nanes.slideset.ui.RoiEditor
-
- goImageNext - Variable in class org.nanes.slideset.ui.RoiEditor
-
- goImageNext - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- goImageNext - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- green - Variable in class org.nanes.slideset.pi.BorderStats
-
- green - Variable in class org.nanes.slideset.pi.BorderStats
-
- green - Variable in class org.nanes.slideset.pi.RegionStats
-
- green - Variable in class org.nanes.slideset.pi.RegionStats
-
- gT - Variable in class org.nanes.slideset.pi.BorderStats
-
- gT - Variable in class org.nanes.slideset.pi.BorderStats
-
- gT - Variable in class org.nanes.slideset.pi.RegionStats
-
- gT - Variable in class org.nanes.slideset.pi.RegionStats
-
- gx1 - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- gx1 - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- gx2 - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- gx2 - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- gy1 - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- gy1 - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- gy2 - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- gy2 - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- i - Variable in class org.nanes.slideset.pi.MathDiv
-
- i - Variable in class org.nanes.slideset.pi.MathDiv
-
- i - Variable in class org.nanes.slideset.pi.Test
-
- i - Variable in class org.nanes.slideset.pi.Test
-
- iftipr - Variable in class org.nanes.slideset.dm.read.ImageFileToDatasetReader
-
- iftipr - Variable in class org.nanes.slideset.dm.read.ImageFileToDatasetReader
-
- iftipr - Variable in class org.nanes.slideset.dm.read.ImageFileToImageWindowReader
-
- iftipr - Variable in class org.nanes.slideset.dm.read.ImageFileToImageWindowReader
-
- ij - Variable in class org.nanes.slideset.dm.DataTypeIDService
-
- ij - Variable in class org.nanes.slideset.dm.DataTypeIDService
-
- ij - Variable in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
- ij - Variable in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
- ij - Variable in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
- ij - Variable in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
- ij - Variable in class org.nanes.slideset.io.XMLService
-
- ij - Variable in class org.nanes.slideset.io.XMLService
-
- ij - Variable in class org.nanes.slideset.pi.OtsuSegmentation
-
- ij - Variable in class org.nanes.slideset.pi.OtsuSegmentation
-
- ij - Variable in class org.nanes.slideset.pi.SlideSetPluginLoader
-
- ij - Variable in class org.nanes.slideset.pi.SlideSetPluginLoader
-
- ij - Variable in class org.nanes.slideset.pi.Test
-
- ij - Variable in class org.nanes.slideset.pi.Test
-
- ij - Variable in class org.nanes.slideset.pi.ThresholdSegmentation
-
- ij - Variable in class org.nanes.slideset.pi.ThresholdSegmentation
-
- ij - Variable in class org.nanes.slideset.pi.WekaSegmentationWrapper
-
- ij - Variable in class org.nanes.slideset.pi.WekaSegmentationWrapper
-
- ij - Variable in class org.nanes.slideset.script.SlideSetScript
-
- ij - Variable in class org.nanes.slideset.script.SlideSetScript
-
- ij - Variable in class org.nanes.slideset.SlideSet
-
ImageJ context reference
- ij - Variable in class org.nanes.slideset.SlideSet
-
ImageJ context reference
- ij - Variable in class org.nanes.slideset.SlideSetIJ2Entry
-
- ij - Variable in class org.nanes.slideset.SlideSetIJ2Entry
-
- ij - Variable in class org.nanes.slideset.ui.HttpHelpLoader
-
- ij - Variable in class org.nanes.slideset.ui.HttpHelpLoader
-
- ij - Variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
- ij - Variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
- ij - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- ij - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- ij - Variable in class org.nanes.slideset.ui.RoiEditor
-
- ij - Variable in class org.nanes.slideset.ui.RoiEditor
-
- ij - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- ij - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- ij - Variable in class org.nanes.slideset.ui.SlideSetLauncher
-
- ij - Variable in class org.nanes.slideset.ui.SlideSetLauncher
-
- ij - Variable in class org.nanes.slideset.ui.SlideSetViewer
-
- ij - Variable in class org.nanes.slideset.ui.SlideSetViewer
-
- IJ1ROIsToSVGFileWriter - Class in org.nanes.slideset.dm.write
-
Write ImageJ1-style ROIs as SVG files.
- IJ1ROIsToSVGFileWriter - Class in org.nanes.slideset.dm.write
-
Write ImageJ1-style ROIs as SVG files.
- IJ1ROIsToSVGFileWriter() - Constructor for class org.nanes.slideset.dm.write.IJ1ROIsToSVGFileWriter
-
- IJ1ROIsToSVGFileWriter() - Constructor for class org.nanes.slideset.dm.write.IJ1ROIsToSVGFileWriter
-
- IJCONSOLE - Static variable in class org.nanes.slideset.script.SlideSetScript
-
- IJCONSOLE - Static variable in class org.nanes.slideset.script.SlideSetScript
-
- IMAGE - Static variable in class org.nanes.slideset.dm.MIME
-
Image of unknown format
- IMAGE - Static variable in class org.nanes.slideset.dm.MIME
-
Image of unknown format
- image - Variable in class org.nanes.slideset.pi.FindMaxima
-
- image - Variable in class org.nanes.slideset.pi.FindMaxima
-
- image - Variable in class org.nanes.slideset.pi.Reslice
-
- image - Variable in class org.nanes.slideset.pi.Reslice
-
- image - Variable in class org.nanes.slideset.pi.ZProject
-
- image - Variable in class org.nanes.slideset.pi.ZProject
-
- imageDisplay - Variable in class org.nanes.slideset.ui.RoiEditor
-
The image display
- imageDisplay - Variable in class org.nanes.slideset.ui.RoiEditor
-
The image display
- ImageDisplayToImageFileWriter - Class in org.nanes.slideset.dm.write
-
- ImageDisplayToImageFileWriter - Class in org.nanes.slideset.dm.write
-
- ImageDisplayToImageFileWriter() - Constructor for class org.nanes.slideset.dm.write.ImageDisplayToImageFileWriter
-
- ImageDisplayToImageFileWriter() - Constructor for class org.nanes.slideset.dm.write.ImageDisplayToImageFileWriter
-
- ImageFileToDatasetReader - Class in org.nanes.slideset.dm.read
-
- ImageFileToDatasetReader - Class in org.nanes.slideset.dm.read
-
- ImageFileToDatasetReader() - Constructor for class org.nanes.slideset.dm.read.ImageFileToDatasetReader
-
- ImageFileToDatasetReader() - Constructor for class org.nanes.slideset.dm.read.ImageFileToDatasetReader
-
- ImageFileToImageDisplayReader - Class in org.nanes.slideset.dm.read
-
- ImageFileToImageDisplayReader - Class in org.nanes.slideset.dm.read
-
- ImageFileToImageDisplayReader() - Constructor for class org.nanes.slideset.dm.read.ImageFileToImageDisplayReader
-
- ImageFileToImageDisplayReader() - Constructor for class org.nanes.slideset.dm.read.ImageFileToImageDisplayReader
-
- ImageFileToImagePlusReader - Class in org.nanes.slideset.dm.read
-
- ImageFileToImagePlusReader - Class in org.nanes.slideset.dm.read
-
- ImageFileToImagePlusReader() - Constructor for class org.nanes.slideset.dm.read.ImageFileToImagePlusReader
-
- ImageFileToImagePlusReader() - Constructor for class org.nanes.slideset.dm.read.ImageFileToImagePlusReader
-
- ImageFileToImageWindowReader - Class in org.nanes.slideset.dm.read
-
- ImageFileToImageWindowReader - Class in org.nanes.slideset.dm.read
-
- ImageFileToImageWindowReader() - Constructor for class org.nanes.slideset.dm.read.ImageFileToImageWindowReader
-
- ImageFileToImageWindowReader() - Constructor for class org.nanes.slideset.dm.read.ImageFileToImageWindowReader
-
- imageList - Variable in class org.nanes.slideset.ui.RoiEditor
-
- imageList - Variable in class org.nanes.slideset.ui.RoiEditor
-
- imageList - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- imageList - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- ImagePlusToImageFileWriter - Class in org.nanes.slideset.dm.write
-
- ImagePlusToImageFileWriter - Class in org.nanes.slideset.dm.write
-
- ImagePlusToImageFileWriter() - Constructor for class org.nanes.slideset.dm.write.ImagePlusToImageFileWriter
-
- ImagePlusToImageFileWriter() - Constructor for class org.nanes.slideset.dm.write.ImagePlusToImageFileWriter
-
- ImagePlusToPngFileWriter - Class in org.nanes.slideset.dm.write
-
- ImagePlusToPngFileWriter - Class in org.nanes.slideset.dm.write
-
- ImagePlusToPngFileWriter() - Constructor for class org.nanes.slideset.dm.write.ImagePlusToPngFileWriter
-
- ImagePlusToPngFileWriter() - Constructor for class org.nanes.slideset.dm.write.ImagePlusToPngFileWriter
-
- imageReaders - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- imageReaders - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- images - Variable in class org.nanes.slideset.ui.RoiEditor
-
- images - Variable in class org.nanes.slideset.ui.RoiEditor
-
- imageSetList - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- imageSetList - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- imageSetNames - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
Names of the image sets
- imageSetNames - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
Names of the image sets
- imageWindow - Variable in class org.nanes.slideset.ui.RoiEditor
-
The image window
- imageWindow - Variable in class org.nanes.slideset.ui.RoiEditor
-
The image window
- imageWindow - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
The image display
- imageWindow - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
The image display
- imgIDs - Variable in class org.nanes.slideset.pi.BinRegions
-
- imgIDs - Variable in class org.nanes.slideset.pi.BinRegions
-
- ImgLinkException - Exception in org.nanes.slideset.ex
-
Signals a problem with a link to an image.
- ImgLinkException - Exception in org.nanes.slideset.ex
-
Signals a problem with a link to an image.
- ImgLinkException() - Constructor for exception org.nanes.slideset.ex.ImgLinkException
-
Creates a new instance of ImgLinkException
without detail message.
- ImgLinkException(String) - Constructor for exception org.nanes.slideset.ex.ImgLinkException
-
Constructs an instance of ImgLinkException
with the specified detail message.
- ImgLinkException(Throwable) - Constructor for exception org.nanes.slideset.ex.ImgLinkException
-
- ImgLinkException(String, Throwable) - Constructor for exception org.nanes.slideset.ex.ImgLinkException
-
- ImgLinkException() - Constructor for exception org.nanes.slideset.ex.ImgLinkException
-
Creates a new instance of ImgLinkException
without detail message.
- ImgLinkException(String) - Constructor for exception org.nanes.slideset.ex.ImgLinkException
-
Constructs an instance of ImgLinkException
with the specified detail message.
- ImgLinkException(Throwable) - Constructor for exception org.nanes.slideset.ex.ImgLinkException
-
- ImgLinkException(String, Throwable) - Constructor for exception org.nanes.slideset.ex.ImgLinkException
-
- imp - Variable in class org.nanes.slideset.pi.CountIntersections
-
- imp - Variable in class org.nanes.slideset.pi.CountIntersections
-
- imp - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- imp - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- imp - Variable in class org.nanes.slideset.pi.WekaSegmentationWrapper
-
- imp - Variable in class org.nanes.slideset.pi.WekaSegmentationWrapper
-
- importData(TransferHandler.TransferSupport) - Method in class org.nanes.slideset.ui.SlideSetLauncher.DropHandler
-
- importData(TransferHandler.TransferSupport) - Method in class org.nanes.slideset.ui.SlideSetLauncher.DropHandler
-
- importData(TransferHandler.TransferSupport) - Method in class org.nanes.slideset.ui.SlideSetViewer.DropHandler
-
- importData(TransferHandler.TransferSupport) - Method in class org.nanes.slideset.ui.SlideSetViewer.DropHandler
-
- inBounds(double[], long[]) - Method in class org.nanes.slideset.pi.BorderStats
-
Check if a point is within the image dimensions
- inBounds(double[], long[]) - Method in class org.nanes.slideset.pi.BorderStats
-
Check if a point is within the image dimensions
- inBounds(double[], long[]) - Method in class org.nanes.slideset.pi.BorderStatsNChan
-
Check if a point is within the image dimensions
- inBounds(double[], long[]) - Method in class org.nanes.slideset.pi.BorderStatsNChan
-
Check if a point is within the image dimensions
- inBounds(double[], long[]) - Method in class org.nanes.slideset.pi.CreateMask
-
- inBounds(double[], long[]) - Method in class org.nanes.slideset.pi.CreateMask
-
- inBounds(double[], long[]) - Method in class org.nanes.slideset.pi.CreateMaskMulti
-
- inBounds(double[], long[]) - Method in class org.nanes.slideset.pi.CreateMaskMulti
-
- inBounds(double[], long[]) - Method in class org.nanes.slideset.pi.RegionStats
-
- inBounds(double[], long[]) - Method in class org.nanes.slideset.pi.RegionStats
-
- inBounds(double[], long[]) - Method in class org.nanes.slideset.pi.RegionStatsNChan
-
- inBounds(double[], long[]) - Method in class org.nanes.slideset.pi.RegionStatsNChan
-
- inBounds(double[], long[]) - Method in class org.nanes.slideset.pi.RegionStatsNChanExclusion
-
- inBounds(double[], long[]) - Method in class org.nanes.slideset.pi.RegionStatsNChanExclusion
-
- inBounds(long[], long[]) - Method in class org.nanes.slideset.pi.ThresholdSegmentation
-
- inBounds(long[], long[]) - Method in class org.nanes.slideset.pi.ThresholdSegmentation
-
- includeTree - Variable in class org.nanes.slideset.io.XMLService
-
- includeTree - Variable in class org.nanes.slideset.io.XMLService
-
- ind(int) - Method in class org.nanes.slideset.io.XMLService
-
Generate an indent for "pretty" XML
- ind(int) - Method in class org.nanes.slideset.io.XMLService
-
Generate an indent for "pretty" XML
- index - Variable in class org.nanes.slideset.pi.ROILengths
-
- index - Variable in class org.nanes.slideset.pi.ROILengths
-
- info - Variable in class org.nanes.slideset.ui.SlideSetLauncher
-
- info - Variable in class org.nanes.slideset.ui.SlideSetLauncher
-
- initialized - Variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
- initialized - Variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
- initialized - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- initialized - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- initialMax - Variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
The initial minimum and maximum values of the data view.
- initialMax - Variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
The initial minimum and maximum values of the data view.
- initialMin - Variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
The initial minimum and maximum values of the data view.
- initialMin - Variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
The initial minimum and maximum values of the data view.
- initValues() - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- initValues() - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- inputChoices - Variable in class org.nanes.slideset.dm.CommandTemplate
-
Input choices
- inputChoices - Variable in class org.nanes.slideset.dm.CommandTemplate
-
Input choices
- inputConstants - Variable in class org.nanes.slideset.dm.CommandTemplate
-
Input constants as strings
- inputConstants - Variable in class org.nanes.slideset.dm.CommandTemplate
-
Input constants as strings
- inputNames - Variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
List of the input names
- inputNames - Variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
List of the input names
- inputs - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
Include inputs in output check boxes
- inputs - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
Include inputs in output check boxes
- inputsMenu - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
Include inputs in output menu
- inputsMenu - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
Include inputs in output menu
- inputZSpacing - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- inputZSpacing - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- IntegerElement - Class in org.nanes.slideset.dm
-
DataElement
for storing integer values
- IntegerElement - Class in org.nanes.slideset.dm
-
DataElement
for storing integer values
- IntegerElement() - Constructor for class org.nanes.slideset.dm.IntegerElement
-
- IntegerElement(Integer) - Constructor for class org.nanes.slideset.dm.IntegerElement
-
- IntegerElement() - Constructor for class org.nanes.slideset.dm.IntegerElement
-
- IntegerElement(Integer) - Constructor for class org.nanes.slideset.dm.IntegerElement
-
- IntToByteReader - Class in org.nanes.slideset.dm.read
-
- IntToByteReader - Class in org.nanes.slideset.dm.read
-
- IntToByteReader() - Constructor for class org.nanes.slideset.dm.read.IntToByteReader
-
- IntToByteReader() - Constructor for class org.nanes.slideset.dm.read.IntToByteReader
-
- IntToDoubleReader - Class in org.nanes.slideset.dm.read
-
- IntToDoubleReader - Class in org.nanes.slideset.dm.read
-
- IntToDoubleReader() - Constructor for class org.nanes.slideset.dm.read.IntToDoubleReader
-
- IntToDoubleReader() - Constructor for class org.nanes.slideset.dm.read.IntToDoubleReader
-
- IntToFloatReader - Class in org.nanes.slideset.dm.read
-
- IntToFloatReader - Class in org.nanes.slideset.dm.read
-
- IntToFloatReader() - Constructor for class org.nanes.slideset.dm.read.IntToFloatReader
-
- IntToFloatReader() - Constructor for class org.nanes.slideset.dm.read.IntToFloatReader
-
- IntToIntReader - Class in org.nanes.slideset.dm.read
-
- IntToIntReader - Class in org.nanes.slideset.dm.read
-
- IntToIntReader() - Constructor for class org.nanes.slideset.dm.read.IntToIntReader
-
- IntToIntReader() - Constructor for class org.nanes.slideset.dm.read.IntToIntReader
-
- IntToIntWriter - Class in org.nanes.slideset.dm.write
-
- IntToIntWriter - Class in org.nanes.slideset.dm.write
-
- IntToIntWriter() - Constructor for class org.nanes.slideset.dm.write.IntToIntWriter
-
- IntToIntWriter() - Constructor for class org.nanes.slideset.dm.write.IntToIntWriter
-
- IntToLongReader - Class in org.nanes.slideset.dm.read
-
- IntToLongReader - Class in org.nanes.slideset.dm.read
-
- IntToLongReader() - Constructor for class org.nanes.slideset.dm.read.IntToLongReader
-
- IntToLongReader() - Constructor for class org.nanes.slideset.dm.read.IntToLongReader
-
- IntToShortReader - Class in org.nanes.slideset.dm.read
-
- IntToShortReader - Class in org.nanes.slideset.dm.read
-
- IntToShortReader() - Constructor for class org.nanes.slideset.dm.read.IntToShortReader
-
- IntToShortReader() - Constructor for class org.nanes.slideset.dm.read.IntToShortReader
-
- inv - Variable in class org.nanes.slideset.pi.BorderStats
-
- inv - Variable in class org.nanes.slideset.pi.BorderStats
-
- inv - Variable in class org.nanes.slideset.pi.BorderStatsNChan
-
- inv - Variable in class org.nanes.slideset.pi.BorderStatsNChan
-
- inv - Variable in class org.nanes.slideset.pi.RegionStats
-
- inv - Variable in class org.nanes.slideset.pi.RegionStats
-
- inv - Variable in class org.nanes.slideset.pi.RegionStatsNChan
-
- inv - Variable in class org.nanes.slideset.pi.RegionStatsNChan
-
- inv - Variable in class org.nanes.slideset.pi.RegionStatsNChanExclusion
-
- inv - Variable in class org.nanes.slideset.pi.RegionStatsNChanExclusion
-
- invert - Variable in class org.nanes.slideset.pi.CountIntersections
-
- invert - Variable in class org.nanes.slideset.pi.CountIntersections
-
- is_rgb - Variable in class org.nanes.slideset.pi.WekaSegmentationWrapper
-
- is_rgb - Variable in class org.nanes.slideset.pi.WekaSegmentationWrapper
-
- isAbreastSegment(double[], double[], double[]) - Static method in class org.nanes.slideset.pi.RoiUtils
-
Is a point next to a line segment?
I.e.
- isAbreastSegment(double[], double[], double[]) - Static method in class org.nanes.slideset.pi.RoiUtils
-
Is a point next to a line segment?
I.e.
- isCellEditable(int, int) - Method in class org.nanes.slideset.ui.SlideSetLockedTableModel
-
- isCellEditable(int, int) - Method in class org.nanes.slideset.ui.SlideSetLockedTableModel
-
- isCellEditable(int, int) - Method in class org.nanes.slideset.ui.SlideSetTableModel
-
- isCellEditable(int, int) - Method in class org.nanes.slideset.ui.SlideSetTableModel
-
- isect - Variable in class org.nanes.slideset.pi.CountIntersections
-
- isect - Variable in class org.nanes.slideset.pi.CountIntersections
-
- isLocked() - Method in class org.nanes.slideset.SlideSet
-
Is the read-only flag set on this SlideSet
?
- isLocked() - Method in class org.nanes.slideset.SlideSet
-
Is the read-only flag set on this SlideSet
?
- isNearBorder(double[], AbstractOverlay, double) - Static method in class org.nanes.slideset.pi.RoiUtils
-
Determine if a point is near a border defined by an set of vertices.
- isNearBorder(double[], PolygonOverlay, double) - Static method in class org.nanes.slideset.pi.RoiUtils
-
Handler for PolygonOverlay
s
- isNearBorder(double[], LineOverlay, double) - Static method in class org.nanes.slideset.pi.RoiUtils
-
Handler for LineOverlay
s
- isNearBorder(double[], GeneralPathOverlay, double) - Static method in class org.nanes.slideset.pi.RoiUtils
-
Handler for GeneralPathOverlay
s
- isNearBorder(double[], double[][], double, boolean) - Static method in class org.nanes.slideset.pi.RoiUtils
-
Determine if a point is near a border defined by an set of vertices.
- isNearBorder(double[], AbstractOverlay, double) - Static method in class org.nanes.slideset.pi.RoiUtils
-
Determine if a point is near a border defined by an set of vertices.
- isNearBorder(double[], PolygonOverlay, double) - Static method in class org.nanes.slideset.pi.RoiUtils
-
Handler for PolygonOverlay
s
- isNearBorder(double[], LineOverlay, double) - Static method in class org.nanes.slideset.pi.RoiUtils
-
Handler for LineOverlay
s
- isNearBorder(double[], GeneralPathOverlay, double) - Static method in class org.nanes.slideset.pi.RoiUtils
-
Handler for GeneralPathOverlay
s
- isNearBorder(double[], double[][], double, boolean) - Static method in class org.nanes.slideset.pi.RoiUtils
-
Determine if a point is near a border defined by an set of vertices.
- isOptionLink - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
Index of which TypeCode
options represent file references
- isOptionLink - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
Index of which TypeCode
options represent file references
- isPrimativeWrapper(Class<?>) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
Is the type a wrapper class for a java primitive?
- isPrimativeWrapper(Class<?>) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
Is the type a wrapper class for a java primitive?
- itdr - Variable in class org.nanes.slideset.dm.read.ImageFileToImageDisplayReader
-
- itdr - Variable in class org.nanes.slideset.dm.read.ImageFileToImageDisplayReader
-
- itemStateChanged(ItemEvent) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- itemStateChanged(ItemEvent) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- labels - Variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
The parameter labels
- labels - Variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
The parameter labels
- labels - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
The result labels
- labels - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
The result labels
- lastPopupPoint - Variable in class org.nanes.slideset.ui.SlideSetViewer
-
Location where the last popup menu was triggered
- lastPopupPoint - Variable in class org.nanes.slideset.ui.SlideSetViewer
-
Location where the last popup menu was triggered
- launcher - Variable in class org.nanes.slideset.ui.SlideSetLauncher.DropHandler
-
- launcher - Variable in class org.nanes.slideset.ui.SlideSetLauncher.DropHandler
-
- layoutHeaders() - Method in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- layoutHeaders() - Method in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- lenE - Variable in class org.nanes.slideset.pi.CountIntersections
-
- lenE - Variable in class org.nanes.slideset.pi.CountIntersections
-
- length - Variable in class org.nanes.slideset.pi.BorderStats
-
- length - Variable in class org.nanes.slideset.pi.BorderStats
-
- length - Variable in class org.nanes.slideset.pi.BorderStatsNChan
-
- length - Variable in class org.nanes.slideset.pi.BorderStatsNChan
-
- length - Variable in class org.nanes.slideset.pi.ROILengths
-
- length - Variable in class org.nanes.slideset.pi.ROILengths
-
- length - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- length - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- length - Variable in class org.nanes.slideset.ui.DynamicHelpResource.GeneratedResource
-
Number of bytes in the resource stream
- length - Variable in class org.nanes.slideset.ui.DynamicHelpResource.GeneratedResource
-
Number of bytes in the resource stream
- lenI - Variable in class org.nanes.slideset.pi.CountIntersections
-
- lenI - Variable in class org.nanes.slideset.pi.CountIntersections
-
- lh - Static variable in class org.nanes.slideset.ui.NanoHTTPd
-
- lh - Static variable in class org.nanes.slideset.ui.NanoHTTPd
-
- LICENCE - Static variable in class org.nanes.slideset.ui.NanoHTTPd
-
The distribution licence
- LICENCE - Static variable in class org.nanes.slideset.ui.NanoHTTPd
-
The distribution licence
- lineColor - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- lineColor - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- linkDir - Variable in class org.nanes.slideset.script.PluginOutputMatcher
-
- linkDir - Variable in class org.nanes.slideset.script.PluginOutputMatcher
-
- linkDirDefault - Static variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- linkDirDefault - Static variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- linkDirDefaults - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
Default link directories for each field and option
- linkDirDefaults - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
Default link directories for each field and option
- LinkException - Exception in org.nanes.slideset.ex
-
Signals a problem with a data table file reference
- LinkException - Exception in org.nanes.slideset.ex
-
Signals a problem with a data table file reference
- LinkException() - Constructor for exception org.nanes.slideset.ex.LinkException
-
Creates a new instance of
LinkException
without detail message.
- LinkException(String) - Constructor for exception org.nanes.slideset.ex.LinkException
-
Constructs an instance of
LinkException
with the specified detail message.
- LinkException(Throwable) - Constructor for exception org.nanes.slideset.ex.LinkException
-
- LinkException(String, Throwable) - Constructor for exception org.nanes.slideset.ex.LinkException
-
- LinkException() - Constructor for exception org.nanes.slideset.ex.LinkException
-
Creates a new instance of
LinkException
without detail message.
- LinkException(String) - Constructor for exception org.nanes.slideset.ex.LinkException
-
Constructs an instance of
LinkException
with the specified detail message.
- LinkException(Throwable) - Constructor for exception org.nanes.slideset.ex.LinkException
-
- LinkException(String, Throwable) - Constructor for exception org.nanes.slideset.ex.LinkException
-
- linkExt - Variable in class org.nanes.slideset.dm.DataTypeIDService.WriterRecord
-
For file links, the default file extension to use with this writer
- linkExt - Variable in class org.nanes.slideset.dm.DataTypeIDService.WriterRecord
-
For file links, the default file extension to use with this writer
- linkExt - Variable in class org.nanes.slideset.script.PluginOutputMatcher
-
- linkExt - Variable in class org.nanes.slideset.script.PluginOutputMatcher
-
- linkExtDefault - Static variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- linkExtDefault - Static variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- linkExtDefaults - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
Default link file prefixes for each field and option
- linkExtDefaults - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
Default link file prefixes for each field and option
- LinkNotFoundException - Exception in org.nanes.slideset.ex
-
Indicates a link points to a file that does not exist.
- LinkNotFoundException - Exception in org.nanes.slideset.ex
-
Indicates a link points to a file that does not exist.
- LinkNotFoundException() - Constructor for exception org.nanes.slideset.ex.LinkNotFoundException
-
Creates a new instance of
LinkNotFoundException
without detail message.
- LinkNotFoundException(String) - Constructor for exception org.nanes.slideset.ex.LinkNotFoundException
-
Constructs an instance of
LinkNotFoundException
with the specified detail message.
- LinkNotFoundException(Throwable) - Constructor for exception org.nanes.slideset.ex.LinkNotFoundException
-
- LinkNotFoundException(String, Throwable) - Constructor for exception org.nanes.slideset.ex.LinkNotFoundException
-
- LinkNotFoundException() - Constructor for exception org.nanes.slideset.ex.LinkNotFoundException
-
Creates a new instance of
LinkNotFoundException
without detail message.
- LinkNotFoundException(String) - Constructor for exception org.nanes.slideset.ex.LinkNotFoundException
-
Constructs an instance of
LinkNotFoundException
with the specified detail message.
- LinkNotFoundException(Throwable) - Constructor for exception org.nanes.slideset.ex.LinkNotFoundException
-
- LinkNotFoundException(String, Throwable) - Constructor for exception org.nanes.slideset.ex.LinkNotFoundException
-
- linkPre - Variable in class org.nanes.slideset.script.PluginOutputMatcher
-
- linkPre - Variable in class org.nanes.slideset.script.PluginOutputMatcher
-
- linkPreDefault - Static variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- linkPreDefault - Static variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- linkPreDefaults - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
Default link file prefixes for each field and option
- linkPreDefaults - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
Default link file prefixes for each field and option
- listeners - Variable in class org.nanes.slideset.ui.SlideSetLog
-
- listeners - Variable in class org.nanes.slideset.ui.SlideSetLog
-
- listPathInstructions(String) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Make a path data String
into a convenient List
!
- listPathInstructions(String) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Make a path data String
into a convenient List
!
- listPathInstructions(String) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Make a path data String
into a convenient List
!
- listPathInstructions(String) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Make a path data String
into a convenient List
!
- lman - Variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
The layout manager
- lman - Variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
The layout manager
- lman - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
The layout manager
- lman - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
The layout manager
- loadData() - Method in class org.nanes.slideset.ui.RoiEditor
-
Load the internal data
- loadData() - Method in class org.nanes.slideset.ui.RoiEditor
-
Load the internal data
- loadDocument(File) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Load the DOM from an SVG file
- loadDocument(File) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Load the DOM from an SVG file
- loadDocument(File) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Load the DOM from an SVG file
- loadDocument(File) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Load the DOM from an SVG file
- loadImage(int) - Method in class org.nanes.slideset.ui.RoiEditor
-
Load and display the selected image
- loadImage(int) - Method in class org.nanes.slideset.ui.RoiEditor
-
Load and display the selected image
- loadImage(int) - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Load and display the selected image.
- loadImage(int) - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Load and display the selected image.
- loadImageData() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Load the index of images
- loadImageData() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Load the index of images
- loadingImage - Variable in class org.nanes.slideset.ui.RoiEditor
-
Busy loading an image flag
- loadingImage - Variable in class org.nanes.slideset.ui.RoiEditor
-
Busy loading an image flag
- loadingImage - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
Busy loading an image flag
- loadingImage - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
Busy loading an image flag
- loadOverlays() - Method in class org.nanes.slideset.ui.RoiEditor
-
Load overlay data from disk
- loadOverlays() - Method in class org.nanes.slideset.ui.RoiEditor
-
Load overlay data from disk
- loadPlugins() - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
Because the CommandService
is persnickety
when launched through Fiji, we'll do this manually.
- loadPlugins() - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
Because the CommandService
is persnickety
when launched through Fiji, we'll do this manually.
- loadRois() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Load the ROI data
- loadRois() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Load the ROI data
- loadSlideSet(File) - Method in class org.nanes.slideset.script.SlideSetScript
-
Load a Slide Set data file
- loadSlideSet(String) - Method in class org.nanes.slideset.script.SlideSetScript
-
Load a slide set data file
- loadSlideSet(File) - Method in class org.nanes.slideset.script.SlideSetScript
-
Load a Slide Set data file
- loadSlideSet(String) - Method in class org.nanes.slideset.script.SlideSetScript
-
Load a slide set data file
- lock() - Method in class org.nanes.slideset.ui.RoiEditor
-
Activate read-only mode and prevent changes to ROIs
- lock() - Method in class org.nanes.slideset.ui.RoiEditor
-
Activate read-only mode and prevent changes to ROIs
- lock() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Activate read-only mode and prevent changes to ROIs
- lock() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Activate read-only mode and prevent changes to ROIs
- locked - Variable in class org.nanes.slideset.SlideSet
-
Is this SlideSet
locked?
- locked - Variable in class org.nanes.slideset.SlideSet
-
Is this SlideSet
locked?
- locked - Variable in class org.nanes.slideset.ui.RoiEditor
-
Read-only mode
- locked - Variable in class org.nanes.slideset.ui.RoiEditor
-
Read-only mode
- locked - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
Read-only mode flag
- locked - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
Read-only mode flag
- locked - Variable in class org.nanes.slideset.ui.SlideSetViewer
-
Read-only mode
- locked - Variable in class org.nanes.slideset.ui.SlideSetViewer
-
Read-only mode
- lockedTables - Variable in class org.nanes.slideset.ui.SlideSetLauncher
-
Data tables that are in use (locked) and the threads using them
- lockedTables - Variable in class org.nanes.slideset.ui.SlideSetLauncher
-
Data tables that are in use (locked) and the threads using them
- lockSlideSet(SlideSet) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
- lockSlideSet(SlideSet) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
- log - Variable in class org.nanes.slideset.pi.BorderStats
-
- log - Variable in class org.nanes.slideset.pi.BorderStats
-
- log - Variable in class org.nanes.slideset.pi.BorderStatsNChan
-
- log - Variable in class org.nanes.slideset.pi.BorderStatsNChan
-
- log - Variable in class org.nanes.slideset.pi.CountIntersections
-
- log - Variable in class org.nanes.slideset.pi.CountIntersections
-
- log - Variable in class org.nanes.slideset.pi.FindMaxima
-
- log - Variable in class org.nanes.slideset.pi.FindMaxima
-
- log - Variable in class org.nanes.slideset.pi.MathDiv
-
- log - Variable in class org.nanes.slideset.pi.MathDiv
-
- log - Variable in class org.nanes.slideset.pi.MathRound
-
- log - Variable in class org.nanes.slideset.pi.MathRound
-
- log - Variable in class org.nanes.slideset.pi.PointsTable
-
- log - Variable in class org.nanes.slideset.pi.PointsTable
-
- log - Variable in class org.nanes.slideset.pi.Reslice
-
- log - Variable in class org.nanes.slideset.pi.Reslice
-
- log - Variable in class org.nanes.slideset.pi.ROILengths
-
- log - Variable in class org.nanes.slideset.pi.ROILengths
-
- log - Variable in class org.nanes.slideset.pi.SlideSetPluginLoader
-
- log - Variable in class org.nanes.slideset.pi.SlideSetPluginLoader
-
- log - Variable in class org.nanes.slideset.pi.UnmixAbsorbance
-
- log - Variable in class org.nanes.slideset.pi.UnmixAbsorbance
-
- log - Variable in class org.nanes.slideset.pi.WekaSegmentationWrapper
-
- log - Variable in class org.nanes.slideset.pi.WekaSegmentationWrapper
-
- log - Variable in class org.nanes.slideset.ui.RoiEditor
-
The log
- log - Variable in class org.nanes.slideset.ui.RoiEditor
-
The log
- log - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
The log
- log - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
The log
- log - Variable in class org.nanes.slideset.ui.SlideSetLauncher
-
- log - Variable in class org.nanes.slideset.ui.SlideSetLauncher
-
- log - Variable in class org.nanes.slideset.ui.SlideSetViewer
-
- log - Variable in class org.nanes.slideset.ui.SlideSetViewer
-
- LOGDEFAULT - Static variable in class org.nanes.slideset.script.SlideSetScript
-
- LOGDEFAULT - Static variable in class org.nanes.slideset.script.SlideSetScript
-
- LogListener - Interface in org.nanes.slideset.ui
-
Interface for receiving messages sent
from the
SlideSetLog
.
- LogListener - Interface in org.nanes.slideset.ui
-
Interface for receiving messages sent
from the
SlideSetLog
.
- logMessage(String) - Method in class org.nanes.slideset.script.SlideSetScript
-
- logMessage(String) - Method in class org.nanes.slideset.script.SlideSetScript
-
- logMessage(String) - Method in interface org.nanes.slideset.ui.LogListener
-
Receive a message from the log.
- logMessage(String) - Method in interface org.nanes.slideset.ui.LogListener
-
Receive a message from the log.
- logMessage(String) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
- logMessage(String) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
- logTo - Variable in class org.nanes.slideset.script.SlideSetScript
-
- logTo - Variable in class org.nanes.slideset.script.SlideSetScript
-
- LongToIntWriter - Class in org.nanes.slideset.dm.write
-
- LongToIntWriter - Class in org.nanes.slideset.dm.write
-
- LongToIntWriter() - Constructor for class org.nanes.slideset.dm.write.LongToIntWriter
-
- LongToIntWriter() - Constructor for class org.nanes.slideset.dm.write.LongToIntWriter
-
- m1 - Variable in class org.nanes.slideset.pi.Manders
-
- m1 - Variable in class org.nanes.slideset.pi.Manders
-
- m2 - Variable in class org.nanes.slideset.pi.Manders
-
- m2 - Variable in class org.nanes.slideset.pi.Manders
-
- main(String...) - Static method in class org.nanes.slideset.SlideSetIJ1Entry
-
- main(String...) - Static method in class org.nanes.slideset.SlideSetIJ1Entry
-
- main(String[]) - Static method in class org.nanes.slideset.TestMain
-
- main(String[]) - Static method in class org.nanes.slideset.TestMain
-
- makeColumnBoundConstantReader(Class<? extends ElementReader>, Object, SlideSet) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
- makeColumnBoundConstantReader(Class<? extends ElementReader>, Object, SlideSet) - Method in class org.nanes.slideset.dm.DataTypeIDService
-
- makeColumnChoice(String, String) - Method in class org.nanes.slideset.script.PluginInputMatcher
-
Register a column choice for a parameter
- makeColumnChoice(String, String) - Method in class org.nanes.slideset.script.PluginInputMatcher
-
Register a column choice for a parameter
- makeConstantChoice(String, String, String) - Method in class org.nanes.slideset.script.PluginInputMatcher
-
Register a constant for a parameter
- makeConstantChoice(String, String, String) - Method in class org.nanes.slideset.script.PluginInputMatcher
-
Register a constant for a parameter
- makeDefaultLink(int, int) - Method in class org.nanes.slideset.SlideSet
-
Set a cell to an auto-generated link
- makeDefaultLink(int, int) - Method in class org.nanes.slideset.SlideSet
-
Set a cell to an auto-generated link
- makeEllipseOverlay(double, double, double, double, Element) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Generate an overlay from parsed ellipse data
- makeEllipseOverlay(double, double, double, double, Element) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Generate an overlay from parsed ellipse data
- makeEllipseOverlay(double, double, double, double, Element) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Generate an ROI from parsed ellipse data
- makeEllipseOverlay(double, double, double, double, Element) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Generate an ROI from parsed ellipse data
- makeParameterOptionsMenu(String[], JFormattedTextField) - Method in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
Create a button and menu to list appropriate
values for an input parameter
- makeParameterOptionsMenu(String[], JFormattedTextField) - Method in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
Create a button and menu to list appropriate
values for an input parameter
- makePathRelative(String, String) - Static method in class org.nanes.slideset.io.Util
-
Make path
relative to workingDirectory
, if possible
- makePathRelative(String, String) - Static method in class org.nanes.slideset.io.Util
-
Make path
relative to workingDirectory
, if possible
- makePolygon(int, double) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- makePolygon(int, double) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- Manders - Class in org.nanes.slideset.pi
-
SlideSet command for measuring Manders' Colocalization Coefficients
within regions of interest.
- Manders - Class in org.nanes.slideset.pi
-
SlideSet command for measuring Manders' Colocalization Coefficients
within regions of interest.
- Manders() - Constructor for class org.nanes.slideset.pi.Manders
-
- Manders() - Constructor for class org.nanes.slideset.pi.Manders
-
- maps - Variable in class org.nanes.slideset.pi.OtsuSegmentation
-
- maps - Variable in class org.nanes.slideset.pi.OtsuSegmentation
-
- mask - Variable in class org.nanes.slideset.pi.CreateMask
-
- mask - Variable in class org.nanes.slideset.pi.CreateMask
-
- mask - Variable in class org.nanes.slideset.pi.CreateMaskMulti
-
- mask - Variable in class org.nanes.slideset.pi.CreateMaskMulti
-
- mask - Variable in class org.nanes.slideset.pi.FilterRegions
-
- mask - Variable in class org.nanes.slideset.pi.FilterRegions
-
- MathAdd - Class in org.nanes.slideset.pi
-
- MathAdd - Class in org.nanes.slideset.pi
-
- MathAdd() - Constructor for class org.nanes.slideset.pi.MathAdd
-
- MathAdd() - Constructor for class org.nanes.slideset.pi.MathAdd
-
- MathDiv - Class in org.nanes.slideset.pi
-
- MathDiv - Class in org.nanes.slideset.pi
-
- MathDiv() - Constructor for class org.nanes.slideset.pi.MathDiv
-
- MathDiv() - Constructor for class org.nanes.slideset.pi.MathDiv
-
- MathMlt - Class in org.nanes.slideset.pi
-
- MathMlt - Class in org.nanes.slideset.pi
-
- MathMlt() - Constructor for class org.nanes.slideset.pi.MathMlt
-
- MathMlt() - Constructor for class org.nanes.slideset.pi.MathMlt
-
- MathRound - Class in org.nanes.slideset.pi
-
Round a double
to an int
- MathRound - Class in org.nanes.slideset.pi
-
Round a double
to an int
- MathRound() - Constructor for class org.nanes.slideset.pi.MathRound
-
- MathRound() - Constructor for class org.nanes.slideset.pi.MathRound
-
- MathSub - Class in org.nanes.slideset.pi
-
- MathSub - Class in org.nanes.slideset.pi
-
- MathSub() - Constructor for class org.nanes.slideset.pi.MathSub
-
- MathSub() - Constructor for class org.nanes.slideset.pi.MathSub
-
- max - Variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- max - Variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- MAX_POWER - Static variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
The exponential power used for computing contrast.
- MAX_POWER - Static variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
The exponential power used for computing contrast.
- maxPoints - Variable in class org.nanes.slideset.pi.FindMaxima
-
- maxPoints - Variable in class org.nanes.slideset.pi.FindMaxima
-
- maxSize - Variable in class org.nanes.slideset.pi.ThresholdSegmentation
-
- maxSize - Variable in class org.nanes.slideset.pi.ThresholdSegmentation
-
- means - Variable in class org.nanes.slideset.pi.BorderStatsNChan
-
- means - Variable in class org.nanes.slideset.pi.BorderStatsNChan
-
- means - Variable in class org.nanes.slideset.pi.RegionStatsNChan
-
- means - Variable in class org.nanes.slideset.pi.RegionStatsNChan
-
- means - Variable in class org.nanes.slideset.pi.RegionStatsNChanExclusion
-
- means - Variable in class org.nanes.slideset.pi.RegionStatsNChanExclusion
-
- menuBar - Variable in class org.nanes.slideset.ui.SlideSetLauncher
-
- menuBar - Variable in class org.nanes.slideset.ui.SlideSetLauncher
-
- menuBar - Variable in class org.nanes.slideset.ui.SlideSetViewer
-
- menuBar - Variable in class org.nanes.slideset.ui.SlideSetViewer
-
- menuColP - Variable in class org.nanes.slideset.ui.SlideSetViewer
-
Column header popup menu
- menuColP - Variable in class org.nanes.slideset.ui.SlideSetViewer
-
Column header popup menu
- menuP - Variable in class org.nanes.slideset.ui.SlideSetViewer
-
Table popup menu
- menuP - Variable in class org.nanes.slideset.ui.SlideSetViewer
-
Table popup menu
- message - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- message - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- MIME - Class in org.nanes.slideset.dm
-
MIME type constants
- MIME - Class in org.nanes.slideset.dm
-
MIME type constants
- MIME() - Constructor for class org.nanes.slideset.dm.MIME
-
- MIME() - Constructor for class org.nanes.slideset.dm.MIME
-
- mime - Variable in class org.nanes.slideset.ui.DynamicHelpResource.GeneratedResource
-
MIME type of the resource stream
- mime - Variable in class org.nanes.slideset.ui.DynamicHelpResource.GeneratedResource
-
MIME type of the resource stream
- mime - Static variable in class org.nanes.slideset.ui.HttpHelpLoader.AboutPage
-
- mime - Static variable in class org.nanes.slideset.ui.HttpHelpLoader.AboutPage
-
- MIME_DEFAULT_BINARY - Static variable in class org.nanes.slideset.ui.NanoHTTPd
-
Common mime types for dynamic content
- MIME_DEFAULT_BINARY - Static variable in class org.nanes.slideset.ui.NanoHTTPd
-
Common mime types for dynamic content
- MIME_HTML - Static variable in class org.nanes.slideset.ui.NanoHTTPd
-
Common mime types for dynamic content
- MIME_HTML - Static variable in class org.nanes.slideset.ui.NanoHTTPd
-
Common mime types for dynamic content
- MIME_PLAINTEXT - Static variable in class org.nanes.slideset.ui.NanoHTTPd
-
Common mime types for dynamic content
- MIME_PLAINTEXT - Static variable in class org.nanes.slideset.ui.NanoHTTPd
-
Common mime types for dynamic content
- MIME_XML - Static variable in class org.nanes.slideset.ui.NanoHTTPd
-
Common mime types for dynamic content
- MIME_XML - Static variable in class org.nanes.slideset.ui.NanoHTTPd
-
Common mime types for dynamic content
- mimeReadableIndex - Variable in class org.nanes.slideset.dm.DataTypeIDService
-
Index associating MIME types with human-readable names:
<MIME type, readable name>
- mimeReadableIndex - Variable in class org.nanes.slideset.dm.DataTypeIDService
-
Index associating MIME types with human-readable names:
<MIME type, readable name>
- mimeType - Variable in class org.nanes.slideset.dm.DataElement
-
- mimeType - Variable in class org.nanes.slideset.dm.DataElement
-
- mimeType - Variable in class org.nanes.slideset.dm.DataTypeIDService.WriterRecord
-
MIME type written by this writer
- mimeType - Variable in class org.nanes.slideset.dm.DataTypeIDService.WriterRecord
-
MIME type written by this writer
- mimeType - Variable in class org.nanes.slideset.ui.NanoHTTPd.Response
-
MIME type of content, e.g.
- mimeType - Variable in class org.nanes.slideset.ui.NanoHTTPd.Response
-
MIME type of content, e.g.
- mimeTypes - Variable in class org.nanes.slideset.dm.DataTypeIDService.ReaderRecord
-
MIME types compatible with this reader
- mimeTypes - Variable in class org.nanes.slideset.dm.DataTypeIDService.ReaderRecord
-
MIME types compatible with this reader
- min - Variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- min - Variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- minMaxChanged() - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
Called when min or max changes.
- minMaxChanged() - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
Called when min or max changes.
- minSize - Variable in class org.nanes.slideset.pi.ThresholdSegmentation
-
- minSize - Variable in class org.nanes.slideset.pi.ThresholdSegmentation
-
- mouseClicked(MouseEvent) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
MouseListener implementation
- mouseClicked(MouseEvent) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
MouseListener implementation
- mouseClicked(MouseEvent) - Method in class org.nanes.slideset.ui.SlideSetViewer
-
MouseListener implementation
- mouseClicked(MouseEvent) - Method in class org.nanes.slideset.ui.SlideSetViewer
-
MouseListener implementation
- mouseEntered(MouseEvent) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
MouseListener implementation
- mouseEntered(MouseEvent) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
MouseListener implementation
- mouseEntered(MouseEvent) - Method in class org.nanes.slideset.ui.SlideSetViewer
-
- mouseEntered(MouseEvent) - Method in class org.nanes.slideset.ui.SlideSetViewer
-
- mouseExited(MouseEvent) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
MouseListener implementation
- mouseExited(MouseEvent) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
MouseListener implementation
- mouseExited(MouseEvent) - Method in class org.nanes.slideset.ui.SlideSetViewer
-
- mouseExited(MouseEvent) - Method in class org.nanes.slideset.ui.SlideSetViewer
-
- mousePressed(MouseEvent) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
MouseListener implementation
- mousePressed(MouseEvent) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
MouseListener implementation
- mousePressed(MouseEvent) - Method in class org.nanes.slideset.ui.SlideSetViewer
-
- mousePressed(MouseEvent) - Method in class org.nanes.slideset.ui.SlideSetViewer
-
- mouseReleased(MouseEvent) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
MouseListener implementation
- mouseReleased(MouseEvent) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
MouseListener implementation
- mouseReleased(MouseEvent) - Method in class org.nanes.slideset.ui.SlideSetViewer
-
- mouseReleased(MouseEvent) - Method in class org.nanes.slideset.ui.SlideSetViewer
-
- MultipleResults - Interface in org.nanes.slideset.pi
-
SlideSetPlugin
s which report multiple results
as arrays or
Lists
should implement this interface.
- MultipleResults - Interface in org.nanes.slideset.pi
-
SlideSetPlugin
s which report multiple results
as arrays or
Lists
should implement this interface.
- myServerSocket - Variable in class org.nanes.slideset.ui.NanoHTTPd
-
- myServerSocket - Variable in class org.nanes.slideset.ui.NanoHTTPd
-
- mySocket - Variable in class org.nanes.slideset.ui.NanoHTTPd.HTTPSession
-
- mySocket - Variable in class org.nanes.slideset.ui.NanoHTTPd.HTTPSession
-
- myTcpPort - Variable in class org.nanes.slideset.ui.NanoHTTPd
-
- myTcpPort - Variable in class org.nanes.slideset.ui.NanoHTTPd
-
- myThread - Variable in class org.nanes.slideset.ui.NanoHTTPd
-
- myThread - Variable in class org.nanes.slideset.ui.NanoHTTPd
-
- offsetBottomRightEdges(PolygonRegionOfInterest, int, int) - Method in class org.nanes.slideset.pi.ThresholdSegmentation
-
Offset the bottom and right edges of an ROI
outlining pixels as a workaround for issues
with the contains()
method.
- offsetBottomRightEdges(PolygonRegionOfInterest, int, int) - Method in class org.nanes.slideset.pi.ThresholdSegmentation
-
Offset the bottom and right edges of an ROI
outlining pixels as a workaround for issues
with the contains()
method.
- okPressed - Variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
- okPressed - Variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
- okPressed - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- okPressed - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- onEvent(OverlayUpdatedEvent) - Method in class org.nanes.slideset.ui.RoiEditor
-
Check to see if one of the ROIs has been changed
- onEvent(OverlayRestructuredEvent) - Method in class org.nanes.slideset.ui.RoiEditor
-
Check to see if one of the ROIs has been restructured
- onEvent(OverlayCreatedEvent) - Method in class org.nanes.slideset.ui.RoiEditor
-
Handle an ROI creation
- onEvent(OverlayDeletedEvent) - Method in class org.nanes.slideset.ui.RoiEditor
-
Handle an ROI deletion
- onEvent(OverlayUpdatedEvent) - Method in class org.nanes.slideset.ui.RoiEditor
-
Check to see if one of the ROIs has been changed
- onEvent(OverlayRestructuredEvent) - Method in class org.nanes.slideset.ui.RoiEditor
-
Check to see if one of the ROIs has been restructured
- onEvent(OverlayCreatedEvent) - Method in class org.nanes.slideset.ui.RoiEditor
-
Handle an ROI creation
- onEvent(OverlayDeletedEvent) - Method in class org.nanes.slideset.ui.RoiEditor
-
Handle an ROI deletion
- openPath - Variable in class org.nanes.slideset.ui.SlideSetLauncher
-
Path to the currently open file
- openPath - Variable in class org.nanes.slideset.ui.SlideSetLauncher
-
Path to the currently open file
- openROIManager - Variable in class org.nanes.slideset.ui.RoiEditor
-
- openROIManager() - Method in class org.nanes.slideset.ui.RoiEditor
-
Open the ImageJ overlay manager window
- openROIManager - Variable in class org.nanes.slideset.ui.RoiEditor
-
- openROIManager() - Method in class org.nanes.slideset.ui.RoiEditor
-
Open the ImageJ overlay manager window
- openROIManager() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Open the IJ1 ROI Manager and line it up below the ROI Editor pane.
- openROIManager() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Open the IJ1 ROI Manager and line it up below the ROI Editor pane.
- openXML() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Open a new file selected using a dialog - do not run on event thread
- openXML(File) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Open a specified file
- openXML() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Open a new file selected using a dialog - do not run on event thread
- openXML(File) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Open a specified file
- OperationCanceledException - Exception in org.nanes.slideset.ex
-
Thrown when a SlideSet operation has been canceled.
- OperationCanceledException - Exception in org.nanes.slideset.ex
-
Thrown when a SlideSet operation has been canceled.
- OperationCanceledException() - Constructor for exception org.nanes.slideset.ex.OperationCanceledException
-
Creates a new instance of
OperationCanceledException
without detail message.
- OperationCanceledException(String) - Constructor for exception org.nanes.slideset.ex.OperationCanceledException
-
Constructs an instance of
OperationCanceledException
with the specified detail
message.
- OperationCanceledException(Throwable) - Constructor for exception org.nanes.slideset.ex.OperationCanceledException
-
- OperationCanceledException(String, Throwable) - Constructor for exception org.nanes.slideset.ex.OperationCanceledException
-
- OperationCanceledException() - Constructor for exception org.nanes.slideset.ex.OperationCanceledException
-
Creates a new instance of
OperationCanceledException
without detail message.
- OperationCanceledException(String) - Constructor for exception org.nanes.slideset.ex.OperationCanceledException
-
Constructs an instance of
OperationCanceledException
with the specified detail
message.
- OperationCanceledException(Throwable) - Constructor for exception org.nanes.slideset.ex.OperationCanceledException
-
- OperationCanceledException(String, Throwable) - Constructor for exception org.nanes.slideset.ex.OperationCanceledException
-
- optionIndex - Variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
An index to match choices in each combo box to the appropriate SlideSet column index
- optionIndex - Variable in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
An index to match choices in each combo box to the appropriate SlideSet column index
- optionIndex - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
Index of TypeCode
options
- optionIndex - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
Index of TypeCode
options
- org.nanes.slideset - package org.nanes.slideset
-
Slide Set tables and the ImageJ plugin
- org.nanes.slideset.dm - package org.nanes.slideset.dm
-
Classes implementing the data model
- org.nanes.slideset.dm.read - package org.nanes.slideset.dm.read
-
Readers for converting "underlying" data to "processed" data
- org.nanes.slideset.dm.write - package org.nanes.slideset.dm.write
-
Writers for converting "processed" data to "underlying" data
- org.nanes.slideset.ex - package org.nanes.slideset.ex
-
Error handling
- org.nanes.slideset.io - package org.nanes.slideset.io
-
Read and write data files
- org.nanes.slideset.pi - package org.nanes.slideset.pi
-
Slide Set commands and plugin management
- org.nanes.slideset.script - package org.nanes.slideset.script
-
- org.nanes.slideset.ui - package org.nanes.slideset.ui
-
The Slide Set user interface
- os - Variable in class org.nanes.slideset.ui.RoiEditor
-
- os - Variable in class org.nanes.slideset.ui.RoiEditor
-
- OtsuSegmentation - Class in org.nanes.slideset.pi
-
Segment an image using Otsu's method.
- OtsuSegmentation - Class in org.nanes.slideset.pi
-
Segment an image using Otsu's method.
- OtsuSegmentation() - Constructor for class org.nanes.slideset.pi.OtsuSegmentation
-
- OtsuSegmentation() - Constructor for class org.nanes.slideset.pi.OtsuSegmentation
-
- out - Variable in class org.nanes.slideset.pi.WekaSegmentationWrapper
-
- out - Variable in class org.nanes.slideset.pi.WekaSegmentationWrapper
-
- outputChoices - Variable in class org.nanes.slideset.dm.CommandTemplate
-
Output choices
- outputChoices - Variable in class org.nanes.slideset.dm.CommandTemplate
-
Output choices
- outputChoices - Variable in class org.nanes.slideset.script.PluginOutputMatcher
-
- outputChoices - Variable in class org.nanes.slideset.script.PluginOutputMatcher
-
- outputDirs - Variable in class org.nanes.slideset.dm.CommandTemplate
-
Output directories
- outputDirs - Variable in class org.nanes.slideset.dm.CommandTemplate
-
Output directories
- outputExts - Variable in class org.nanes.slideset.dm.CommandTemplate
-
Output file extensions
- outputExts - Variable in class org.nanes.slideset.dm.CommandTemplate
-
Output file extensions
- outputPres - Variable in class org.nanes.slideset.dm.CommandTemplate
-
Output file prefixes
- outputPres - Variable in class org.nanes.slideset.dm.CommandTemplate
-
Output file prefixes
- outputSanityChecks() - Method in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- outputSanityChecks() - Method in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- outputSlices - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- outputSlices - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- outputZSpacing - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- outputZSpacing - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- overlap - Variable in class org.nanes.slideset.pi.ROIOverlap
-
- overlap - Variable in class org.nanes.slideset.pi.ROIOverlap
-
- overlay - Variable in class org.nanes.slideset.pi.ROILengths
-
- overlay - Variable in class org.nanes.slideset.pi.ROILengths
-
- owner - Variable in class org.nanes.slideset.dm.DataElement
-
- owner - Variable in class org.nanes.slideset.dm.DataElement
-
- p1ds - Variable in class org.nanes.slideset.pi.UnmixAbsorbance
-
- p1ds - Variable in class org.nanes.slideset.pi.UnmixAbsorbance
-
- p2ds - Variable in class org.nanes.slideset.pi.UnmixAbsorbance
-
- p2ds - Variable in class org.nanes.slideset.pi.UnmixAbsorbance
-
- pageIndex - Variable in class org.nanes.slideset.ui.HttpHelpLoader
-
- pageIndex - Variable in class org.nanes.slideset.ui.HttpHelpLoader
-
- pane - Variable in class org.nanes.slideset.ui.SlideSetViewer
-
- pane - Variable in class org.nanes.slideset.ui.SlideSetViewer
-
- parent - Variable in class org.nanes.slideset.SlideSet
-
Parent of this SlideSet
- parent - Variable in class org.nanes.slideset.SlideSet
-
Parent of this SlideSet
- parentFields - Variable in class org.nanes.slideset.dm.CommandTemplate
-
Parent fields to copy
- parentFields - Variable in class org.nanes.slideset.dm.CommandTemplate
-
Parent fields to copy
- parseCircle(Element) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Generate an overlay from a circle
element
- parseCircle(Element) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Generate an overlay from a circle
element
- parseCircle(Element) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Generate an ROI from a circle
element
- parseCircle(Element) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Generate an ROI from a circle
element
- parseDocument(Document) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Get the list of overlays that can be created from the DOM
- parseDocument(Document) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Get the list of overlays that can be created from the DOM
- parseDocument(Document) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Get the list of ROIs that can be created from the DOM
- parseDocument(Document) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Get the list of ROIs that can be created from the DOM
- parseEllipse(Element) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Generate an overlay from an ellipse
element
- parseEllipse(Element) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Generate an overlay from an ellipse
element
- parseEllipse(Element) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Generate an ROI from an ellipse
element
- parseEllipse(Element) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Generate an ROI from an ellipse
element
- parseLength(String) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Parse an SVG length String
(possibly with units), and convert to pixels
- parseLength(String) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Parse an SVG length String
(possibly with units), and convert to pixels
- parseLength(String) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Parse an SVG length String
(possibly with units), and convert to pixels
- parseLength(String) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Parse an SVG length String
(possibly with units), and convert to pixels
- parseLine(Element) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Generate an overlay from a line
element.
- parseLine(Element) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Generate an overlay from a line
element.
- parseLine(Element) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Generate an ROI from a line
element.
- parseLine(Element) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Generate an ROI from a line
element.
- parseListOfNumbers(String) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Parse a list of numbers, possibly with units
- parseListOfNumbers(String) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Parse a list of numbers, possibly with units
- parseListOfNumbers(String) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Parse a list of numbers, possibly with units
- parseListOfNumbers(String) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Parse a list of numbers, possibly with units
- parseListOfPoints(String) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Parse a list of points, as used in polygon
and polyline
elements
- parseListOfPoints(String) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Parse a list of points, as used in polygon
and polyline
elements
- parseListOfPoints(String) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Parse a list of points, as used in polygon
and polyline
elements
- parseListOfPoints(String) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Parse a list of points, as used in polygon
and polyline
elements
- parseNode(Node) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Generate an overlay from an SVG node
- parseNode(Node) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Generate an overlay from an SVG node
- parseNode(Node) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Generate an overlay from an SVG node
- parseNode(Node) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Generate an overlay from an SVG node
- parsePath(Element) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Generate an overlay from a path
element
- parsePath(Element) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Generate an overlay from a path
element
- parsePath(Element) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Generate an ROI from a path
element
May return a different type of ROI, depending on the data:
- parsePath(Element) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Generate an ROI from a path
element
May return a different type of ROI, depending on the data:
- parsePolygon(Element) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Generate an overlay from a polygon
element
- parsePolygon(Element) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Generate an overlay from a polygon
element
- parsePolygon(Element) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Generate an ROI from a polygon
element
- parsePolygon(Element) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Generate an ROI from a polygon
element
- parsePolyline(Element) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Generate an overlay from a polyline
element
- parsePolyline(Element) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Generate an overlay from a polyline
element
- parsePolyline(Element) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Generate an ROI from a polyline
element
- parsePolyline(Element) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Generate an ROI from a polyline
element
- parseRect(Element) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Generate an overlay from a rect
element
- parseRect(Element) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Generate an overlay from a rect
element
- parseRect(Element) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Generate an ROI from a rect
element
- parseRect(Element) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Generate an ROI from a rect
element
- parseRecursiveMenuAdd(String[], String, JMenu) - Method in class org.nanes.slideset.ui.SlideSetViewer
-
- parseRecursiveMenuAdd(String[], String, JMenu) - Method in class org.nanes.slideset.ui.SlideSetViewer
-
- parseRecursiveMenuAdd(String[], String, JMenu, ActionListener) - Static method in class org.nanes.slideset.ui.UIUtil
-
Add a menu item to a menu tree, along with sub-menu nodes if needed
- parseRecursiveMenuAdd(String[], String, JMenu, ActionListener) - Static method in class org.nanes.slideset.ui.UIUtil
-
Add a menu item to a menu tree, along with sub-menu nodes if needed
- parseRGBtoPigment(String, int) - Method in class org.nanes.slideset.pi.UnmixAbsorbance
-
Parse a whitespace-separated RGB string to an array of absorbance values
- parseRGBtoPigment(String, int) - Method in class org.nanes.slideset.pi.UnmixAbsorbance
-
Parse a whitespace-separated RGB string to an array of absorbance values
- parseTransform(double[], String) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Transform a coordinate pair
- parseTransform(double[], String) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Transform a coordinate pair
- parseTransform(double[], String) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Transform a coordinate pair
- parseTransform(double[], String) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Transform a coordinate pair
- path - Variable in class org.nanes.slideset.pi.WekaClassifierFile
-
- path - Variable in class org.nanes.slideset.pi.WekaClassifierFile
-
- pickAndRunCommand() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Launch a
CommandPicker
dialog, and run the
selected ImageJ
Command
.
- pickAndRunCommand() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Launch a
CommandPicker
dialog, and run the
selected ImageJ
Command
.
- pigmentOne - Variable in class org.nanes.slideset.pi.UnmixAbsorbance
-
- pigmentOne - Variable in class org.nanes.slideset.pi.UnmixAbsorbance
-
- pigmentTwo - Variable in class org.nanes.slideset.pi.UnmixAbsorbance
-
- pigmentTwo - Variable in class org.nanes.slideset.pi.UnmixAbsorbance
-
- PLANE - Static variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- PLANE - Static variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- PluginInputMatcher - Class in org.nanes.slideset.script
-
A scriptable (i.e.
- PluginInputMatcher - Class in org.nanes.slideset.script
-
A scriptable (i.e.
- PluginInputMatcher() - Constructor for class org.nanes.slideset.script.PluginInputMatcher
-
- PluginInputMatcher() - Constructor for class org.nanes.slideset.script.PluginInputMatcher
-
- PluginInputMatcherFrame - Class in org.nanes.slideset.ui
-
GUI for assigning SlideSet
columns to plugin inputs
- PluginInputMatcherFrame - Class in org.nanes.slideset.ui
-
GUI for assigning SlideSet
columns to plugin inputs
- PluginInputMatcherFrame(SlideSet, ImageJ, DataTypeIDService) - Constructor for class org.nanes.slideset.ui.PluginInputMatcherFrame
-
- PluginInputMatcherFrame(SlideSet, ImageJ, DataTypeIDService) - Constructor for class org.nanes.slideset.ui.PluginInputMatcherFrame
-
- PluginInputPicker - Interface in org.nanes.slideset.pi
-
Scheme for selecting among available options
for assigning plugin input parameter values.
- PluginInputPicker - Interface in org.nanes.slideset.pi
-
Scheme for selecting among available options
for assigning plugin input parameter values.
- PluginOutputMatcher - Class in org.nanes.slideset.script
-
A scriptable (i.e.
- PluginOutputMatcher - Class in org.nanes.slideset.script
-
A scriptable (i.e.
- PluginOutputMatcher() - Constructor for class org.nanes.slideset.script.PluginOutputMatcher
-
- PluginOutputMatcher() - Constructor for class org.nanes.slideset.script.PluginOutputMatcher
-
- PluginOutputMatcherFrame - Class in org.nanes.slideset.ui
-
GUI for selecting options for handling plugin outputs.
- PluginOutputMatcherFrame - Class in org.nanes.slideset.ui
-
GUI for selecting options for handling plugin outputs.
- PluginOutputMatcherFrame(ImageJ, DataTypeIDService) - Constructor for class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- PluginOutputMatcherFrame(ImageJ, DataTypeIDService) - Constructor for class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
- PluginOutputPicker - Interface in org.nanes.slideset.pi
-
Scheme for selecting among available options for
handling plugin output values.
- PluginOutputPicker - Interface in org.nanes.slideset.pi
-
Scheme for selecting among available options for
handling plugin output values.
- plugins - Variable in class org.nanes.slideset.pi.SlideSetPluginLoader
-
- plugins - Variable in class org.nanes.slideset.pi.SlideSetPluginLoader
-
- PNG - Static variable in class org.nanes.slideset.dm.MIME
-
- PNG - Static variable in class org.nanes.slideset.dm.MIME
-
- PointsTable - Class in org.nanes.slideset.pi
-
Extract coordinates from PointRoi
s into a table
- PointsTable - Class in org.nanes.slideset.pi
-
Extract coordinates from PointRoi
s into a table
- PointsTable() - Constructor for class org.nanes.slideset.pi.PointsTable
-
- PointsTable() - Constructor for class org.nanes.slideset.pi.PointsTable
-
- populateText() - Method in class org.nanes.slideset.ui.SlideSetPropertiesViewer
-
- populateText() - Method in class org.nanes.slideset.ui.SlideSetPropertiesViewer
-
- populateTree(DefaultMutableTreeNode, SlideSet) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Iteratively populate the tree pane
- populateTree(DefaultMutableTreeNode, SlideSet) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Iteratively populate the tree pane
- popupMenuHash - Variable in class org.nanes.slideset.ui.SlideSetViewer
-
Index specifying popup menus associated with various components
- popupMenuHash - Variable in class org.nanes.slideset.ui.SlideSetViewer
-
Index specifying popup menus associated with various components
- popupMenus - Variable in class org.nanes.slideset.ui.SlideSetLauncher
-
- popupMenus - Variable in class org.nanes.slideset.ui.SlideSetLauncher
-
- port - Variable in class org.nanes.slideset.ui.HttpHelpLoader
-
- port - Variable in class org.nanes.slideset.ui.HttpHelpLoader
-
- pre - Static variable in class org.nanes.slideset.ui.HttpHelpLoader
-
- pre - Static variable in class org.nanes.slideset.ui.HttpHelpLoader
-
- print(String) - Method in class org.nanes.slideset.ui.SlideSetLog
-
Relay a message to the log listeners.
- print(String) - Method in class org.nanes.slideset.ui.SlideSetLog
-
Relay a message to the log listeners.
- println(String) - Method in class org.nanes.slideset.ui.SlideSetLog
-
Relay a message (with newline character appended)
to the log listeners.
- println(String) - Method in class org.nanes.slideset.ui.SlideSetLog
-
Relay a message (with newline character appended)
to the log listeners.
- printLogHead() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Print a header message to the
info
window
- printLogHead() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Print a header message to the
info
window
- prob - Variable in class org.nanes.slideset.pi.WekaSegmentationWrapper
-
- prob - Variable in class org.nanes.slideset.pi.WekaSegmentationWrapper
-
- processedType - Variable in class org.nanes.slideset.dm.DataTypeIDService.ReaderRecord
-
Type returned by this reader's read()
method
- processedType - Variable in class org.nanes.slideset.dm.DataTypeIDService.ReaderRecord
-
Type returned by this reader's read()
method
- processedType - Variable in class org.nanes.slideset.dm.DataTypeIDService.WriterRecord
-
Type accepted by this writer's write()
method
- processedType - Variable in class org.nanes.slideset.dm.DataTypeIDService.WriterRecord
-
Type accepted by this writer's write()
method
- prominence - Variable in class org.nanes.slideset.pi.FindMaxima
-
- prominence - Variable in class org.nanes.slideset.pi.FindMaxima
-
- ps - Variable in class org.nanes.slideset.dm.DataTypeIDService
-
- ps - Variable in class org.nanes.slideset.dm.DataTypeIDService
-
- ps - Variable in class org.nanes.slideset.io.XMLService
-
- ps - Variable in class org.nanes.slideset.io.XMLService
-
- putColumn(ImageProcessor, int, int, float[], int) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- putColumn(ImageProcessor, int, int, float[], int) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- putRow(ImageProcessor, int, int, float[], int) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- putRow(ImageProcessor, int, int, float[], int) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- pw - Variable in class org.nanes.slideset.io.CSVService
-
- pw - Variable in class org.nanes.slideset.io.CSVService
-
- r - Variable in class org.nanes.slideset.pi.Correlation
-
- r - Variable in class org.nanes.slideset.pi.Correlation
-
- rangeChoice - Variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- rangeChoice - Variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- rds - Variable in class org.nanes.slideset.pi.UnmixAbsorbance
-
- rds - Variable in class org.nanes.slideset.pi.UnmixAbsorbance
-
- read(int) - Method in class org.nanes.slideset.dm.ColumnBoundReader
-
Read data from the specified row
- read(int) - Method in class org.nanes.slideset.dm.ColumnBoundReader
-
Read data from the specified row
- read(BooleanElement) - Method in class org.nanes.slideset.dm.read.BooleanToBooleanReader
-
- read(BooleanElement) - Method in class org.nanes.slideset.dm.read.BooleanToBooleanReader
-
- read(BooleanElement) - Method in class org.nanes.slideset.dm.read.BooleanToByteReader
-
- read(BooleanElement) - Method in class org.nanes.slideset.dm.read.BooleanToByteReader
-
- read(BooleanElement) - Method in class org.nanes.slideset.dm.read.BooleanToIntReader
-
- read(BooleanElement) - Method in class org.nanes.slideset.dm.read.BooleanToIntReader
-
- read(BooleanElement) - Method in class org.nanes.slideset.dm.read.BooleanToShortReader
-
- read(BooleanElement) - Method in class org.nanes.slideset.dm.read.BooleanToShortReader
-
- read(DoubleElement) - Method in class org.nanes.slideset.dm.read.DoubleToDoubleReader
-
- read(DoubleElement) - Method in class org.nanes.slideset.dm.read.DoubleToDoubleReader
-
- read(DoubleElement) - Method in class org.nanes.slideset.dm.read.DoubleToFloatReader
-
- read(DoubleElement) - Method in class org.nanes.slideset.dm.read.DoubleToFloatReader
-
- read(E) - Method in interface org.nanes.slideset.dm.read.ElementReader
-
Convert "underlying" data to "processed" data.
- read(E) - Method in interface org.nanes.slideset.dm.read.ElementReader
-
Convert "underlying" data to "processed" data.
- read(FileLinkElement) - Method in class org.nanes.slideset.dm.read.ImageFileToDatasetReader
-
- read(FileLinkElement) - Method in class org.nanes.slideset.dm.read.ImageFileToDatasetReader
-
- read(FileLinkElement) - Method in class org.nanes.slideset.dm.read.ImageFileToImageDisplayReader
-
- read(FileLinkElement) - Method in class org.nanes.slideset.dm.read.ImageFileToImageDisplayReader
-
- read(FileLinkElement) - Method in class org.nanes.slideset.dm.read.ImageFileToImagePlusReader
-
- read(FileLinkElement) - Method in class org.nanes.slideset.dm.read.ImageFileToImagePlusReader
-
- read(FileLinkElement) - Method in class org.nanes.slideset.dm.read.ImageFileToImageWindowReader
-
- read(FileLinkElement) - Method in class org.nanes.slideset.dm.read.ImageFileToImageWindowReader
-
- read(IntegerElement) - Method in class org.nanes.slideset.dm.read.IntToByteReader
-
- read(IntegerElement) - Method in class org.nanes.slideset.dm.read.IntToByteReader
-
- read(IntegerElement) - Method in class org.nanes.slideset.dm.read.IntToDoubleReader
-
- read(IntegerElement) - Method in class org.nanes.slideset.dm.read.IntToDoubleReader
-
- read(IntegerElement) - Method in class org.nanes.slideset.dm.read.IntToFloatReader
-
- read(IntegerElement) - Method in class org.nanes.slideset.dm.read.IntToFloatReader
-
- read(IntegerElement) - Method in class org.nanes.slideset.dm.read.IntToIntReader
-
- read(IntegerElement) - Method in class org.nanes.slideset.dm.read.IntToIntReader
-
- read(IntegerElement) - Method in class org.nanes.slideset.dm.read.IntToLongReader
-
- read(IntegerElement) - Method in class org.nanes.slideset.dm.read.IntToLongReader
-
- read(IntegerElement) - Method in class org.nanes.slideset.dm.read.IntToShortReader
-
- read(IntegerElement) - Method in class org.nanes.slideset.dm.read.IntToShortReader
-
- read(FileLinkElement) - Method in class org.nanes.slideset.dm.read.RoisetFileToAbstractOverlayReader
-
- read(FileLinkElement) - Method in class org.nanes.slideset.dm.read.RoisetFileToAbstractOverlayReader
-
- read(StringElement) - Method in class org.nanes.slideset.dm.read.StringToStringReader
-
- read(StringElement) - Method in class org.nanes.slideset.dm.read.StringToStringReader
-
- read(FileLinkElement) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
- read(FileLinkElement) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
- read(FileLinkElement) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
- read(FileLinkElement) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
- read(FileLinkElement) - Method in class org.nanes.slideset.dm.read.WekaClassifierReader
-
- read(FileLinkElement) - Method in class org.nanes.slideset.dm.read.WekaClassifierReader
-
- read(File, ArrayList<CommandTemplate>, ArrayList<String>) - Method in class org.nanes.slideset.io.CommandSkeletonService
-
Read a command skeleton from an XML file.
- read(File, ArrayList<CommandTemplate>, ArrayList<String>) - Method in class org.nanes.slideset.io.CommandSkeletonService
-
Read a command skeleton from an XML file.
- read(File) - Method in class org.nanes.slideset.io.XMLService
-
Read SlideSet
data from an XML file
- read(File) - Method in class org.nanes.slideset.io.XMLService
-
Read SlideSet
data from an XML file
- reader - Variable in class org.nanes.slideset.dm.ColumnBoundReader
-
- reader - Variable in class org.nanes.slideset.dm.ColumnBoundReader
-
- reader - Variable in class org.nanes.slideset.dm.DataTypeIDService.ReaderRecord
-
- reader - Variable in class org.nanes.slideset.dm.DataTypeIDService.ReaderRecord
-
- ReaderRecord(String, String, Class<P>, Class<E>, String[], boolean) - Constructor for class org.nanes.slideset.dm.DataTypeIDService.ReaderRecord
-
- ReaderRecord(String, String, Class<P>, Class<E>, String[], boolean) - Constructor for class org.nanes.slideset.dm.DataTypeIDService.ReaderRecord
-
- readTable() - Method in class org.nanes.slideset.io.XMLService
-
Nestable utility function to read one SlideSet
- readTable() - Method in class org.nanes.slideset.io.XMLService
-
Nestable utility function to read one SlideSet
- readXML(XMLStreamReader) - Method in class org.nanes.slideset.dm.CommandTemplate
-
Populate these properties from an XML stream.
- readXML(XMLStreamReader) - Method in class org.nanes.slideset.dm.CommandTemplate
-
Populate these properties from an XML stream.
- rebuildNow() - Method in class org.nanes.slideset.ui.FastUpdateImageDisplay
-
Trigger a call to rebuild()
.
- rebuildNow() - Method in class org.nanes.slideset.ui.FastUpdateImageDisplay
-
Trigger a call to rebuild()
.
- red - Variable in class org.nanes.slideset.pi.BorderStats
-
- red - Variable in class org.nanes.slideset.pi.BorderStats
-
- red - Variable in class org.nanes.slideset.pi.RegionStats
-
- red - Variable in class org.nanes.slideset.pi.RegionStats
-
- reduce(Object, int) - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
Get element result
from an output Object
which may or may not be an array or a List
.
- reduce(Object, int) - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
Get element result
from an output Object
which may or may not be an array or a List
.
- reduceClass(Class<?>) - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
If a class is an array or a
List
, returns the class of the
array or list element.
- reduceClass(Class<?>) - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
If a class is an array or a
List
, returns the class of the
array or list element.
- reflect(double[], double[]) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Point a
reflected about point b
- reflect(double[], double[]) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Point a
reflected about point b
- reflect(double[], double[]) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Point a
reflected about point b
- reflect(double[], double[]) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Point a
reflected about point b
- refreshList() - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
Redo the search for plugins
- refreshList() - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
Redo the search for plugins
- refreshTree() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Refresh the tree in case any changes have been made to the tables
- refreshTree() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Refresh the tree in case any changes have been made to the tables
- regions - Variable in class org.nanes.slideset.pi.CreateMask
-
- regions - Variable in class org.nanes.slideset.pi.CreateMask
-
- regions - Variable in class org.nanes.slideset.pi.CreateMaskMulti
-
- regions - Variable in class org.nanes.slideset.pi.CreateMaskMulti
-
- regions - Variable in class org.nanes.slideset.pi.FilterRegions
-
- regions - Variable in class org.nanes.slideset.pi.FilterRegions
-
- RegionStats - Class in org.nanes.slideset.pi
-
- RegionStats - Class in org.nanes.slideset.pi
-
- RegionStats() - Constructor for class org.nanes.slideset.pi.RegionStats
-
- RegionStats() - Constructor for class org.nanes.slideset.pi.RegionStats
-
- RegionStatsNChan - Class in org.nanes.slideset.pi
-
- RegionStatsNChan - Class in org.nanes.slideset.pi
-
- RegionStatsNChan() - Constructor for class org.nanes.slideset.pi.RegionStatsNChan
-
- RegionStatsNChan() - Constructor for class org.nanes.slideset.pi.RegionStatsNChan
-
- RegionStatsNChanExclusion - Class in org.nanes.slideset.pi
-
This is a modification of RegionStatsNChan designed to exclude
pixels below the given threshold.
- RegionStatsNChanExclusion - Class in org.nanes.slideset.pi
-
This is a modification of RegionStatsNChan designed to exclude
pixels below the given threshold.
- RegionStatsNChanExclusion() - Constructor for class org.nanes.slideset.pi.RegionStatsNChanExclusion
-
- RegionStatsNChanExclusion() - Constructor for class org.nanes.slideset.pi.RegionStatsNChanExclusion
-
- registerBrightnessContrast(BrightnessContrastRoi) - Method in class org.nanes.slideset.ui.RoiEditor
-
Register a Brightness/Contrast dialog
- registerBrightnessContrast(BrightnessContrastRoi) - Method in class org.nanes.slideset.ui.RoiEditor
-
Register a Brightness/Contrast dialog
- registerChildWindow(SlideSetWindow) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Keep track of a child window
- registerChildWindow(SlideSetWindow) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Keep track of a child window
- registerListener(LogListener) - Method in class org.nanes.slideset.ui.SlideSetLog
-
- registerListener(LogListener) - Method in class org.nanes.slideset.ui.SlideSetLog
-
- releaseSlideSet(SlideSet) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Release a previously locked
SlideSet
for
further use.
- releaseSlideSet(SlideSet) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Release a previously locked
SlideSet
for
further use.
- removeChild(SlideSet) - Method in class org.nanes.slideset.SlideSet
-
Remove a SlideSet
as a child of this SlideSet
- removeChild(SlideSet) - Method in class org.nanes.slideset.SlideSet
-
Remove a SlideSet
as a child of this SlideSet
- removeColumn(int) - Method in class org.nanes.slideset.SlideSet
-
Remove a column
- removeColumn(int) - Method in class org.nanes.slideset.SlideSet
-
Remove a column
- removeRow(int) - Method in class org.nanes.slideset.SlideSet
-
Remove a row
- removeRow(int) - Method in class org.nanes.slideset.SlideSet
-
Remove a row
- renameTable() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Rename a table
- renameTable() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Rename a table
- renameTable() - Method in class org.nanes.slideset.ui.SlideSetViewer
-
Rename this table
- renameTable() - Method in class org.nanes.slideset.ui.SlideSetViewer
-
Rename this table
- resetLog() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Get user confirmation to clear the log
- resetLog() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Get user confirmation to clear the log
- Reslice - Class in org.nanes.slideset.pi
-
Reslice image along a linear ROI
This command is a limited reimplementation of the ImageJ Reslice command
(ij.plugin.Slicer
).
- Reslice - Class in org.nanes.slideset.pi
-
Reslice image along a linear ROI
This command is a limited reimplementation of the ImageJ Reslice command
(ij.plugin.Slicer
).
- Reslice() - Constructor for class org.nanes.slideset.pi.Reslice
-
- Reslice() - Constructor for class org.nanes.slideset.pi.Reslice
-
- reslice(ImagePlus) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- reslice(ImagePlus) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- resliceHyperstack(ImagePlus) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- resliceHyperstack(ImagePlus) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- resliceRectOrLine(ImagePlus) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- resliceRectOrLine(ImagePlus) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- resliceTimeLapseHyperstack(ImagePlus) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- resliceTimeLapseHyperstack(ImagePlus) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- resolvePath(String) - Method in class org.nanes.slideset.SlideSet
-
Resolve a possibly abstract path using this
SlideSet
's working directory.
- resolvePath(String) - Method in class org.nanes.slideset.SlideSet
-
Resolve a possibly abstract path using this
SlideSet
's working directory.
- Response() - Constructor for class org.nanes.slideset.ui.NanoHTTPd.Response
-
Default constructor: response = HTTP_OK, data = mime = 'null'
- Response(String, String, InputStream) - Constructor for class org.nanes.slideset.ui.NanoHTTPd.Response
-
Basic constructor.
- Response(String, String, String) - Constructor for class org.nanes.slideset.ui.NanoHTTPd.Response
-
Convenience method that makes an InputStream out of
given text.
- Response() - Constructor for class org.nanes.slideset.ui.NanoHTTPd.Response
-
Default constructor: response = HTTP_OK, data = mime = 'null'
- Response(String, String, InputStream) - Constructor for class org.nanes.slideset.ui.NanoHTTPd.Response
-
Basic constructor.
- Response(String, String, String) - Constructor for class org.nanes.slideset.ui.NanoHTTPd.Response
-
Convenience method that makes an InputStream out of
given text.
- revertOverlays() - Method in class org.nanes.slideset.ui.RoiEditor
-
With user confirmation, revert overlays to last saved version.
- revertOverlays() - Method in class org.nanes.slideset.ui.RoiEditor
-
With user confirmation, revert overlays to last saved version.
- revertRois() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
With user confirmation, revert overlays to last saved version.
- revertRois() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
With user confirmation, revert overlays to last saved version.
- rgb - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- rgb - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- roi - Variable in class org.nanes.slideset.pi.BorderStats
-
- roi - Variable in class org.nanes.slideset.pi.BorderStats
-
- roi - Variable in class org.nanes.slideset.pi.BorderStatsNChan
-
- roi - Variable in class org.nanes.slideset.pi.BorderStatsNChan
-
- roi - Variable in class org.nanes.slideset.pi.Correlation
-
- roi - Variable in class org.nanes.slideset.pi.Correlation
-
- roi - Variable in class org.nanes.slideset.pi.Manders
-
- roi - Variable in class org.nanes.slideset.pi.Manders
-
- roi - Variable in class org.nanes.slideset.pi.RegionStats
-
- roi - Variable in class org.nanes.slideset.pi.RegionStats
-
- roi - Variable in class org.nanes.slideset.pi.RegionStatsNChan
-
- roi - Variable in class org.nanes.slideset.pi.RegionStatsNChan
-
- roi - Variable in class org.nanes.slideset.pi.RegionStatsNChanExclusion
-
- roi - Variable in class org.nanes.slideset.pi.RegionStatsNChanExclusion
-
- ROI2 - Static variable in class org.nanes.slideset.dm.MIME
-
- ROI2 - Static variable in class org.nanes.slideset.dm.MIME
-
- roia - Variable in class org.nanes.slideset.pi.ROIOverlap
-
- roia - Variable in class org.nanes.slideset.pi.ROIOverlap
-
- roib - Variable in class org.nanes.slideset.pi.ROIOverlap
-
- roib - Variable in class org.nanes.slideset.pi.ROIOverlap
-
- roiEditor - Variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- roiEditor - Variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- RoiEditor - Class in org.nanes.slideset.ui
-
Editor for ROI set files.
- RoiEditor - Class in org.nanes.slideset.ui
-
Editor for ROI set files.
- RoiEditor(SlideSet, DataTypeIDService, ImageJ, SlideSetLog) - Constructor for class org.nanes.slideset.ui.RoiEditor
-
- RoiEditor(SlideSet, DataTypeIDService, ImageJ, SlideSetLog) - Constructor for class org.nanes.slideset.ui.RoiEditor
-
- RoiEditorIJ1 - Class in org.nanes.slideset.ui
-
ROI Set Editor using the ImageJ1 user interface
- RoiEditorIJ1 - Class in org.nanes.slideset.ui
-
ROI Set Editor using the ImageJ1 user interface
- RoiEditorIJ1(SlideSet, DataTypeIDService, ImageJ, SlideSetLog) - Constructor for class org.nanes.slideset.ui.RoiEditorIJ1
-
- RoiEditorIJ1(SlideSet, DataTypeIDService, ImageJ, SlideSetLog) - Constructor for class org.nanes.slideset.ui.RoiEditorIJ1
-
- ROILengths - Class in org.nanes.slideset.pi
-
- ROILengths - Class in org.nanes.slideset.pi
-
- ROILengths() - Constructor for class org.nanes.slideset.pi.ROILengths
-
- ROILengths() - Constructor for class org.nanes.slideset.pi.ROILengths
-
- RoiLinkException - Exception in org.nanes.slideset.ex
-
Signals a problem with a link to an ROI set.
- RoiLinkException - Exception in org.nanes.slideset.ex
-
Signals a problem with a link to an ROI set.
- RoiLinkException() - Constructor for exception org.nanes.slideset.ex.RoiLinkException
-
Creates a new instance of
RoiLinkException
without detail message.
- RoiLinkException(String) - Constructor for exception org.nanes.slideset.ex.RoiLinkException
-
Constructs an instance of
RoiLinkException
with the specified detail message.
- RoiLinkException(Throwable) - Constructor for exception org.nanes.slideset.ex.RoiLinkException
-
- RoiLinkException(String, Throwable) - Constructor for exception org.nanes.slideset.ex.RoiLinkException
-
- RoiLinkException() - Constructor for exception org.nanes.slideset.ex.RoiLinkException
-
Creates a new instance of
RoiLinkException
without detail message.
- RoiLinkException(String) - Constructor for exception org.nanes.slideset.ex.RoiLinkException
-
Constructs an instance of
RoiLinkException
with the specified detail message.
- RoiLinkException(Throwable) - Constructor for exception org.nanes.slideset.ex.RoiLinkException
-
- RoiLinkException(String, Throwable) - Constructor for exception org.nanes.slideset.ex.RoiLinkException
-
- roiManager - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
The ROI manager
- roiManager() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Get the ROI manager
- roiManager - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
The ROI manager
- roiManager() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Get the ROI manager
- roiModified(ImagePlus, int) - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Automatically add ROIs to the ROI manager.
- roiModified(ImagePlus, int) - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Automatically add ROIs to the ROI manager.
- ROIOverlap - Class in org.nanes.slideset.pi
-
Count overlapping pixels in two sets of ROIs.
- ROIOverlap - Class in org.nanes.slideset.pi
-
Count overlapping pixels in two sets of ROIs.
- ROIOverlap() - Constructor for class org.nanes.slideset.pi.ROIOverlap
-
- ROIOverlap() - Constructor for class org.nanes.slideset.pi.ROIOverlap
-
- roiPoints - Variable in class org.nanes.slideset.pi.PointsTable
-
- roiPoints - Variable in class org.nanes.slideset.pi.PointsTable
-
- roiReaders - Variable in class org.nanes.slideset.ui.RoiEditor
-
- roiReaders - Variable in class org.nanes.slideset.ui.RoiEditor
-
- roiReaders - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- roiReaders - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- rois - Variable in class org.nanes.slideset.pi.BinRegions
-
- rois - Variable in class org.nanes.slideset.pi.BinRegions
-
- rois - Variable in class org.nanes.slideset.pi.CountIntersections
-
- rois - Variable in class org.nanes.slideset.pi.CountIntersections
-
- RoisAlias - Class in org.nanes.slideset.dm
-
Alias for ij.gui.Roi[]
- RoisAlias - Class in org.nanes.slideset.dm
-
Alias for ij.gui.Roi[]
- RoisAlias() - Constructor for class org.nanes.slideset.dm.RoisAlias
-
- RoisAlias() - Constructor for class org.nanes.slideset.dm.RoisAlias
-
- RoisetFileToAbstractOverlayReader - Class in org.nanes.slideset.dm.read
-
- RoisetFileToAbstractOverlayReader - Class in org.nanes.slideset.dm.read
-
- RoisetFileToAbstractOverlayReader() - Constructor for class org.nanes.slideset.dm.read.RoisetFileToAbstractOverlayReader
-
- RoisetFileToAbstractOverlayReader() - Constructor for class org.nanes.slideset.dm.read.RoisetFileToAbstractOverlayReader
-
- roiSetList - Variable in class org.nanes.slideset.ui.RoiEditor
-
- roiSetList - Variable in class org.nanes.slideset.ui.RoiEditor
-
- roiSetList - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- roiSetList - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- roiSetNames - Variable in class org.nanes.slideset.ui.RoiEditor
-
Names of the ROI sets
- roiSetNames - Variable in class org.nanes.slideset.ui.RoiEditor
-
Names of the ROI sets
- roiSetNames - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
Names of the ROI sets
- roiSetNames - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
Names of the ROI sets
- roiSets - Variable in class org.nanes.slideset.ui.RoiEditor
-
ROI sets AbstractOverlay[image#][Roi#]
- roiSets - Variable in class org.nanes.slideset.ui.RoiEditor
-
ROI sets AbstractOverlay[image#][Roi#]
- roiSets - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
ROI sets AbstractOverlay[image#][Roi#]
- roiSets - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
ROI sets AbstractOverlay[image#][Roi#]
- RoiUtils - Class in org.nanes.slideset.pi
-
Utility functions for working with regions of interest
- RoiUtils - Class in org.nanes.slideset.pi
-
Utility functions for working with regions of interest
- RoiUtils() - Constructor for class org.nanes.slideset.pi.RoiUtils
-
- RoiUtils() - Constructor for class org.nanes.slideset.pi.RoiUtils
-
- roiWriters - Variable in class org.nanes.slideset.ui.RoiEditor
-
- roiWriters - Variable in class org.nanes.slideset.ui.RoiEditor
-
- roiWriters - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- roiWriters - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- roots - Variable in class org.nanes.slideset.ui.HttpHelpLoader
-
- roots - Variable in class org.nanes.slideset.ui.HttpHelpLoader
-
- roots - Variable in class org.nanes.slideset.ui.JarHTTPd
-
List of packages within which to search for
resources to serve
- roots - Variable in class org.nanes.slideset.ui.JarHTTPd
-
List of packages within which to search for
resources to serve
- rotate - Variable in class org.nanes.slideset.pi.Reslice
-
- rotate - Variable in class org.nanes.slideset.pi.Reslice
-
- rotate - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- rotate - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- rotateS - Static variable in class org.nanes.slideset.pi.SilentSlicer
-
- rotateS - Static variable in class org.nanes.slideset.pi.SilentSlicer
-
- row(SlideSet, int) - Method in class org.nanes.slideset.io.CSVService
-
- row(SlideSet, int) - Method in class org.nanes.slideset.io.CSVService
-
- rT - Variable in class org.nanes.slideset.pi.BorderStats
-
- rT - Variable in class org.nanes.slideset.pi.BorderStats
-
- rT - Variable in class org.nanes.slideset.pi.RegionStats
-
- rT - Variable in class org.nanes.slideset.pi.RegionStats
-
- run() - Method in class org.nanes.slideset.pi.BinRegions
-
- run() - Method in class org.nanes.slideset.pi.BinRegions
-
- run() - Method in class org.nanes.slideset.pi.BorderStats
-
- run() - Method in class org.nanes.slideset.pi.BorderStats
-
- run() - Method in class org.nanes.slideset.pi.BorderStatsNChan
-
- run() - Method in class org.nanes.slideset.pi.BorderStatsNChan
-
- run() - Method in class org.nanes.slideset.pi.Correlation
-
- run() - Method in class org.nanes.slideset.pi.Correlation
-
- run() - Method in class org.nanes.slideset.pi.CountIntersections
-
- run() - Method in class org.nanes.slideset.pi.CountIntersections
-
- run() - Method in class org.nanes.slideset.pi.CreateMask
-
- run() - Method in class org.nanes.slideset.pi.CreateMask
-
- run() - Method in class org.nanes.slideset.pi.CreateMaskMulti
-
- run() - Method in class org.nanes.slideset.pi.CreateMaskMulti
-
- run() - Method in class org.nanes.slideset.pi.FilterRegions
-
- run() - Method in class org.nanes.slideset.pi.FilterRegions
-
- run() - Method in class org.nanes.slideset.pi.FindMaxima
-
- run() - Method in class org.nanes.slideset.pi.FindMaxima
-
- run() - Method in class org.nanes.slideset.pi.Manders
-
- run() - Method in class org.nanes.slideset.pi.Manders
-
- run() - Method in class org.nanes.slideset.pi.MathAdd
-
- run() - Method in class org.nanes.slideset.pi.MathAdd
-
- run() - Method in class org.nanes.slideset.pi.MathDiv
-
- run() - Method in class org.nanes.slideset.pi.MathDiv
-
- run() - Method in class org.nanes.slideset.pi.MathMlt
-
- run() - Method in class org.nanes.slideset.pi.MathMlt
-
- run() - Method in class org.nanes.slideset.pi.MathRound
-
- run() - Method in class org.nanes.slideset.pi.MathRound
-
- run() - Method in class org.nanes.slideset.pi.MathSub
-
- run() - Method in class org.nanes.slideset.pi.MathSub
-
- run() - Method in class org.nanes.slideset.pi.OtsuSegmentation
-
- run() - Method in class org.nanes.slideset.pi.OtsuSegmentation
-
- run() - Method in class org.nanes.slideset.pi.PointsTable
-
- run() - Method in class org.nanes.slideset.pi.PointsTable
-
- run() - Method in class org.nanes.slideset.pi.RegionStats
-
- run() - Method in class org.nanes.slideset.pi.RegionStats
-
- run() - Method in class org.nanes.slideset.pi.RegionStatsNChan
-
- run() - Method in class org.nanes.slideset.pi.RegionStatsNChan
-
- run() - Method in class org.nanes.slideset.pi.RegionStatsNChanExclusion
-
- run() - Method in class org.nanes.slideset.pi.RegionStatsNChanExclusion
-
- run() - Method in class org.nanes.slideset.pi.Reslice
-
- run() - Method in class org.nanes.slideset.pi.Reslice
-
- run() - Method in class org.nanes.slideset.pi.ROILengths
-
- run() - Method in class org.nanes.slideset.pi.ROILengths
-
- run() - Method in class org.nanes.slideset.pi.ROIOverlap
-
- run() - Method in class org.nanes.slideset.pi.ROIOverlap
-
- run() - Method in class org.nanes.slideset.pi.Test
-
- run() - Method in class org.nanes.slideset.pi.Test
-
- run() - Method in class org.nanes.slideset.pi.ThresholdSegmentation
-
- run() - Method in class org.nanes.slideset.pi.ThresholdSegmentation
-
- run() - Method in class org.nanes.slideset.pi.UnmixAbsorbance
-
- run() - Method in class org.nanes.slideset.pi.UnmixAbsorbance
-
- run() - Method in class org.nanes.slideset.pi.WekaSegmentationWrapper
-
- run() - Method in class org.nanes.slideset.pi.WekaSegmentationWrapper
-
- run() - Method in class org.nanes.slideset.pi.ZProject
-
- run() - Method in class org.nanes.slideset.pi.ZProject
-
- run(String) - Method in class org.nanes.slideset.SlideSetIJ1Entry
-
- run(String) - Method in class org.nanes.slideset.SlideSetIJ1Entry
-
- run() - Method in class org.nanes.slideset.SlideSetIJ2Entry
-
- run() - Method in class org.nanes.slideset.SlideSetIJ2Entry
-
- run() - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- run() - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- run() - Method in class org.nanes.slideset.ui.NanoHTTPd.HTTPSession
-
- run() - Method in class org.nanes.slideset.ui.NanoHTTPd.HTTPSession
-
- runCommandSkeleton() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Run a command skeleton
- runCommandSkeleton() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Run a command skeleton
- runCount - Variable in class org.nanes.slideset.pi.BinRegions
-
- runCount - Variable in class org.nanes.slideset.pi.BinRegions
-
- runPlugin(String, SlideSet, PluginInputPicker, PluginOutputPicker) - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
Run a SlideSetPlugin
- runPlugin(CommandInfo, SlideSet, PluginInputPicker, PluginOutputPicker) - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
Run a SlideSetPlugin
- runPlugin(String, SlideSet, PluginInputPicker, PluginOutputPicker) - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
Run a SlideSetPlugin
- runPlugin(CommandInfo, SlideSet, PluginInputPicker, PluginOutputPicker) - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
Run a SlideSetPlugin
- runPlugin(String, SlideSet, PluginInputPicker, PluginOutputPicker) - Method in class org.nanes.slideset.script.SlideSetScript
-
Run a Slide Set command programmatically
- runPlugin(String, SlideSet, PluginInputPicker, PluginOutputPicker) - Method in class org.nanes.slideset.script.SlideSetScript
-
Run a Slide Set command programmatically
- runSkeleton(List<CommandTemplate>, List<String>, SlideSet, SlideSetPluginLoader, boolean) - Method in class org.nanes.slideset.io.CommandSkeletonService
-
Run a command skeleton on a data table.
- runSkeleton(List<CommandTemplate>, List<String>, SlideSet, SlideSetPluginLoader, boolean) - Method in class org.nanes.slideset.io.CommandSkeletonService
-
Run a command skeleton on a data table.
- runSspl(String) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Run a SlideSet plugin command
- runSspl(CommandInfo) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Run an ImageJ Command
- runSspl(String) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Run a SlideSet plugin command
- runSspl(CommandInfo) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Run an ImageJ Command
- S_MAX - Static variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- S_MAX - Static variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- S_MIN - Static variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- S_MIN - Static variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- saveChanges - Variable in class org.nanes.slideset.ui.RoiEditor
-
- saveChanges - Variable in class org.nanes.slideset.ui.RoiEditor
-
- saveChanges - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- saveChanges - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- saveCommandSkeleton() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Export command skeleton data
- saveCommandSkeleton() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Export command skeleton data
- saveCSV(SlideSet, File) - Method in class org.nanes.slideset.script.SlideSetScript
-
Export a Slide Set data table as a CSV file
- saveCSV(SlideSet, String) - Method in class org.nanes.slideset.script.SlideSetScript
-
Export a Slide Set data table as a CSV file
- saveCSV(SlideSet, File) - Method in class org.nanes.slideset.script.SlideSetScript
-
Export a Slide Set data table as a CSV file
- saveCSV(SlideSet, String) - Method in class org.nanes.slideset.script.SlideSetScript
-
Export a Slide Set data table as a CSV file
- saveCSV() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Export table data as a CSV file
- saveCSV() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Export table data as a CSV file
- savedParentFields - Variable in class org.nanes.slideset.script.PluginOutputMatcher
-
- savedParentFields - Variable in class org.nanes.slideset.script.PluginOutputMatcher
-
- saveLineInfo(Roi) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- saveLineInfo(Roi) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- saveLogText() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Write the log window text to a file
- saveLogText() - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Write the log window text to a file
- saveOutputFile(String, String, String, String, String) - Method in class org.nanes.slideset.script.PluginOutputMatcher
-
Register an output to be saved as a file link.
- saveOutputFile(String, String, String, String, String) - Method in class org.nanes.slideset.script.PluginOutputMatcher
-
Register an output to be saved as a file link.
- saveOutputValue(String, String) - Method in class org.nanes.slideset.script.PluginOutputMatcher
-
Register an output to be saved directly in the result table.
- saveOutputValue(String, String) - Method in class org.nanes.slideset.script.PluginOutputMatcher
-
Register an output to be saved directly in the result table.
- saveOverlays() - Method in class org.nanes.slideset.ui.RoiEditor
-
Save overlays drawn on the current image to memory, not to disk.
- saveOverlays() - Method in class org.nanes.slideset.ui.RoiEditor
-
Save overlays drawn on the current image to memory, not to disk.
- saveParentField(String) - Method in class org.nanes.slideset.script.PluginOutputMatcher
-
Register a parent field to be copied to the result table
- saveParentField(String) - Method in class org.nanes.slideset.script.PluginOutputMatcher
-
Register a parent field to be copied to the result table
- saveResults(Module, ArrayList<ModuleItem<?>>, boolean, ArrayList<ColumnBoundWriter>, ArrayList<Integer>, SlideSet, SlideSet, int) - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
Save results from a command execution
- saveResults(Module, ArrayList<ModuleItem<?>>, boolean, ArrayList<ColumnBoundWriter>, ArrayList<Integer>, SlideSet, SlideSet, int) - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
Save results from a command execution
- saveRois() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Save ROIs from the ROI manager (to memory, not to disk).
- saveRois() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Save ROIs from the ROI manager (to memory, not to disk).
- saveSlideSet(SlideSet, File) - Method in class org.nanes.slideset.script.SlideSetScript
-
Save a Slide Set data file
- saveSlideSet(SlideSet, String) - Method in class org.nanes.slideset.script.SlideSetScript
-
Save a Slide Set data file
- saveSlideSet(SlideSet, File) - Method in class org.nanes.slideset.script.SlideSetScript
-
Save a Slide Set data file
- saveSlideSet(SlideSet, String) - Method in class org.nanes.slideset.script.SlideSetScript
-
Save a Slide Set data file
- saveTmpFile(byte[], int, int) - Method in class org.nanes.slideset.ui.NanoHTTPd.HTTPSession
-
Retrieves the content of a sent file and saves it
to a temporary file.
- saveTmpFile(byte[], int, int) - Method in class org.nanes.slideset.ui.NanoHTTPd.HTTPSession
-
Retrieves the content of a sent file and saves it
to a temporary file.
- saveXML(boolean) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Save a file
- saveXML(boolean) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
Save a file
- segmentLengths - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- segmentLengths - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- segs - Variable in class org.nanes.slideset.pi.ThresholdSegmentation
-
- segs - Variable in class org.nanes.slideset.pi.ThresholdSegmentation
-
- selectedParentFields - Variable in class org.nanes.slideset.script.PluginOutputMatcher
-
- selectedParentFields - Variable in class org.nanes.slideset.script.PluginOutputMatcher
-
- sendError(String, String) - Method in class org.nanes.slideset.ui.NanoHTTPd.HTTPSession
-
Returns an error message as a HTTP response and
throws InterruptedException to stop further request processing.
- sendError(String, String) - Method in class org.nanes.slideset.ui.NanoHTTPd.HTTPSession
-
Returns an error message as a HTTP response and
throws InterruptedException to stop further request processing.
- sendResponse(String, String, Properties, InputStream) - Method in class org.nanes.slideset.ui.NanoHTTPd.HTTPSession
-
Sends given response to the socket.
- sendResponse(String, String, Properties, InputStream) - Method in class org.nanes.slideset.ui.NanoHTTPd.HTTPSession
-
Sends given response to the socket.
- serve(String, String, Properties, Properties, Properties) - Method in class org.nanes.slideset.ui.JarHTTPd
-
- serve(String, String, Properties, Properties, Properties) - Method in class org.nanes.slideset.ui.JarHTTPd
-
- serve(String, String, Properties, Properties, Properties) - Method in class org.nanes.slideset.ui.NanoHTTPd
-
Override this to customize the server.
- serve(String, String, Properties, Properties, Properties) - Method in class org.nanes.slideset.ui.NanoHTTPd
-
Override this to customize the server.
- serveFile(String, Properties, File, boolean) - Method in class org.nanes.slideset.ui.NanoHTTPd
-
Serves file from homeDir and its' subdirectories (only).
- serveFile(String, Properties, File, boolean) - Method in class org.nanes.slideset.ui.NanoHTTPd
-
Serves file from homeDir and its' subdirectories (only).
- serveJar(String, Properties) - Method in class org.nanes.slideset.ui.JarHTTPd
-
Search for a JVM resource
- serveJar(String, Properties) - Method in class org.nanes.slideset.ui.JarHTTPd
-
Search for a JVM resource
- server - Variable in class org.nanes.slideset.ui.HttpHelpLoader
-
- server - Variable in class org.nanes.slideset.ui.HttpHelpLoader
-
- serveStream(InputStream, Properties, int, String) - Method in class org.nanes.slideset.ui.JarHTTPd
-
Serve data from a stream.
- serveStream(InputStream, Properties, int, String) - Method in class org.nanes.slideset.ui.JarHTTPd
-
Serve data from a stream.
- setActionListeners() - Method in class org.nanes.slideset.ui.RoiEditor
-
Set action listeners for the controls
- setActionListeners() - Method in class org.nanes.slideset.ui.RoiEditor
-
Set action listeners for the controls
- setActionListeners() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Set action listeners for the controls
- setActionListeners() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Set action listeners for the controls
- setBrightness(int) - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- setBrightness(int) - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- setColumnDefaultPath(int, String) - Method in class org.nanes.slideset.SlideSet
-
Set the default relative path associated with the column.
- setColumnDefaultPath(int, String) - Method in class org.nanes.slideset.SlideSet
-
Set the default relative path associated with the column.
- setColumnMimeType(int, String) - Method in class org.nanes.slideset.SlideSet
-
Set the column MIME type
- setColumnMimeType(int, String) - Method in class org.nanes.slideset.SlideSet
-
Set the column MIME type
- setColumnName(int, String) - Method in class org.nanes.slideset.SlideSet
-
Set the name of a column
- setColumnName(int, String) - Method in class org.nanes.slideset.SlideSet
-
Set the name of a column
- setCommandClass(String) - Method in class org.nanes.slideset.dm.CommandTemplate
-
Set the command class name
- setCommandClass(String) - Method in class org.nanes.slideset.dm.CommandTemplate
-
Set the command class name
- setCommandTemplate(CommandTemplate) - Method in class org.nanes.slideset.SlideSet
-
Set the command template data for this SlideSet
- setCommandTemplate(CommandTemplate) - Method in class org.nanes.slideset.SlideSet
-
Set the command template data for this SlideSet
- setContrast(int) - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- setContrast(int) - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- setCreationParams(LinkedHashMap) - Method in class org.nanes.slideset.SlideSet
-
Set the creation parameters of this SlideSet
- setCreationParams(LinkedHashMap) - Method in class org.nanes.slideset.SlideSet
-
Set the creation parameters of this SlideSet
- setDefault() - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- setDefault() - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- setDefaultLinkCount(int, int) - Method in class org.nanes.slideset.SlideSet
-
Set the counter for default links for a column.
- setDefaultLinkCount(int, int) - Method in class org.nanes.slideset.SlideSet
-
Set the counter for default links for a column.
- setDefaultLinkExtension(int, String) - Method in class org.nanes.slideset.SlideSet
-
Set the default link extension for a column.
- setDefaultLinkExtension(int, String) - Method in class org.nanes.slideset.SlideSet
-
Set the default link extension for a column.
- setDefaultLinkPrefix(int, String) - Method in class org.nanes.slideset.SlideSet
-
Set the prefix for default links for a column.
- setDefaultLinkPrefix(int, String) - Method in class org.nanes.slideset.SlideSet
-
Set the prefix for default links for a column.
- setFromSequence() - Method in class org.nanes.slideset.ui.SlideSetViewer
-
Set values of selected cells using a sequence
- setFromSequence() - Method in class org.nanes.slideset.ui.SlideSetViewer
-
Set values of selected cells using a sequence
- setHelpPath(String, HelpLoader) - Method in class org.nanes.slideset.io.CommandSkeletonService.CommandTemplateInputPicker
-
- setHelpPath(String, HelpLoader) - Method in class org.nanes.slideset.io.CommandSkeletonService.CommandTemplateInputPicker
-
- setHelpPath(String, HelpLoader) - Method in interface org.nanes.slideset.pi.PluginInputPicker
-
Register the documentation path for this plugin.
- setHelpPath(String, HelpLoader) - Method in interface org.nanes.slideset.pi.PluginInputPicker
-
Register the documentation path for this plugin.
- setHelpPath(String, HelpLoader) - Method in class org.nanes.slideset.script.PluginInputMatcher
-
- setHelpPath(String, HelpLoader) - Method in class org.nanes.slideset.script.PluginInputMatcher
-
- setHelpPath(String, HelpLoader) - Method in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
- setHelpPath(String, HelpLoader) - Method in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
- setImage(int) - Method in class org.nanes.slideset.ui.RoiEditor
-
Change display to the image with the given index
in the list.
- setImage(int) - Method in class org.nanes.slideset.ui.RoiEditor
-
Change display to the image with the given index
in the list.
- setImage(int) - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Open the indexed image, with wrap-around correction
for out of range indeces.
- setImage(int) - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Open the indexed image, with wrap-around correction
for out of range indeces.
- setImageSet(int) - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Open the currently-selected image from the indexed image set.
- setImageSet(int) - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Open the currently-selected image from the indexed image set.
- setInputChoices(ArrayList<Integer>, ArrayList<Object>) - Method in class org.nanes.slideset.dm.CommandTemplate
-
Set the command input choice parameters.
- setInputChoices(ArrayList<Integer>, ArrayList<Object>) - Method in class org.nanes.slideset.dm.CommandTemplate
-
Set the command input choice parameters.
- setLock(boolean) - Method in class org.nanes.slideset.SlideSet
-
Set the read-only flag for this SlideSet
.
- setLock(boolean) - Method in class org.nanes.slideset.SlideSet
-
Set the read-only flag for this SlideSet
.
- setMaximum(double) - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- setMaximum(double) - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- setMimeType(String) - Method in class org.nanes.slideset.dm.DataElement
-
Set the MIME type of this element
- setMimeType(String) - Method in class org.nanes.slideset.dm.DataElement
-
Set the MIME type of this element
- setMinimum(double) - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- setMinimum(double) - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- setName(String) - Method in class org.nanes.slideset.SlideSet
-
Set the name of this SlideSet
- setName(String) - Method in class org.nanes.slideset.SlideSet
-
Set the name of this SlideSet
- setOutputChoices(ArrayList<Integer>, ArrayList<Integer>, ArrayList<String>, ArrayList<String>, ArrayList<String>) - Method in class org.nanes.slideset.dm.CommandTemplate
-
Set the command output choices.
- setOutputChoices(ArrayList<Integer>, ArrayList<Integer>, ArrayList<String>, ArrayList<String>, ArrayList<String>) - Method in class org.nanes.slideset.dm.CommandTemplate
-
Set the command output choices.
- setOwner(SlideSet) - Method in class org.nanes.slideset.dm.DataElement
-
Set the SlideSet
table which owns this element
- setOwner(SlideSet) - Method in class org.nanes.slideset.dm.DataElement
-
Set the SlideSet
table which owns this element
- setParent(SlideSet) - Method in class org.nanes.slideset.SlideSet
-
Register a SlideSet
as the parent of this SlideSet
- setParent(SlideSet) - Method in class org.nanes.slideset.SlideSet
-
Register a SlideSet
as the parent of this SlideSet
- setParentFieldLabels(String[]) - Method in class org.nanes.slideset.io.CommandSkeletonService.CommandTemplateOutputPicker
-
- setParentFieldLabels(String[]) - Method in class org.nanes.slideset.io.CommandSkeletonService.CommandTemplateOutputPicker
-
- setParentFieldLabels(String[]) - Method in interface org.nanes.slideset.pi.PluginOutputPicker
-
Register fields from the parent table that
are available for copying to the results table.
- setParentFieldLabels(String[]) - Method in interface org.nanes.slideset.pi.PluginOutputPicker
-
Register fields from the parent table that
are available for copying to the results table.
- setParentFieldLabels(String[]) - Method in class org.nanes.slideset.script.PluginOutputMatcher
-
- setParentFieldLabels(String[]) - Method in class org.nanes.slideset.script.PluginOutputMatcher
-
- setParentFieldLabels(String[]) - Method in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
Add a popup menu to allow selection of parent
fields that should be included in the
results table.
- setParentFieldLabels(String[]) - Method in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
Add a popup menu to allow selection of parent
fields that should be included in the
results table.
- setPath(SlideSet, String) - Static method in class org.nanes.slideset.io.Util
-
- setPath(SlideSet, String) - Static method in class org.nanes.slideset.io.Util
-
- setPath(String) - Method in class org.nanes.slideset.pi.WekaClassifierFile
-
- setPath(String) - Method in class org.nanes.slideset.pi.WekaClassifierFile
-
- setPathForTree(SlideSet, String) - Static method in class org.nanes.slideset.io.Util
-
Set the working directory for a SlideSet
, along with
all of its relatives
- setPathForTree(SlideSet, String) - Static method in class org.nanes.slideset.io.Util
-
Set the working directory for a SlideSet
, along with
all of its relatives
- setROISet(int) - Method in class org.nanes.slideset.ui.RoiEditor
-
Load the selected ROI set into the display.
- setROISet(int) - Method in class org.nanes.slideset.ui.RoiEditor
-
Load the selected ROI set into the display.
- setRoiSet(int) - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Load the indexed ROI set into the display.
- setRoiSet(int) - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Load the indexed ROI set into the display.
- setUnderlying(T) - Method in class org.nanes.slideset.dm.DataElement
-
Set this element's "underlying" value
- setUnderlying(T) - Method in class org.nanes.slideset.dm.DataElement
-
Set this element's "underlying" value
- setUnderlying(int, int, Object) - Method in class org.nanes.slideset.SlideSet
-
Change the underlying table-stored value of an item.
- setUnderlying(int, int, Object) - Method in class org.nanes.slideset.SlideSet
-
Change the underlying table-stored value of an item.
- setUnderlyingText(String) - Method in class org.nanes.slideset.dm.BooleanElement
-
- setUnderlyingText(String) - Method in class org.nanes.slideset.dm.BooleanElement
-
- setUnderlyingText(String) - Method in class org.nanes.slideset.dm.DataElement
-
Set this element's "underlying" value based on a
String
- setUnderlyingText(String) - Method in class org.nanes.slideset.dm.DataElement
-
Set this element's "underlying" value based on a
String
- setUnderlyingText(String) - Method in class org.nanes.slideset.dm.DoubleElement
-
- setUnderlyingText(String) - Method in class org.nanes.slideset.dm.DoubleElement
-
- setUnderlyingText(String) - Method in class org.nanes.slideset.dm.FileLinkElement
-
- setUnderlyingText(String) - Method in class org.nanes.slideset.dm.FileLinkElement
-
- setUnderlyingText(String) - Method in class org.nanes.slideset.dm.IntegerElement
-
- setUnderlyingText(String) - Method in class org.nanes.slideset.dm.IntegerElement
-
- setUnderlyingText(String) - Method in class org.nanes.slideset.dm.StringElement
-
- setUnderlyingText(String) - Method in class org.nanes.slideset.dm.StringElement
-
- setupFile(String, int, int, String) - Method in class org.nanes.slideset.dm.write.AbstractOverlaysToSVGFileWriter
-
Start the SVG file
- setupFile(String, int, int, String) - Method in class org.nanes.slideset.dm.write.AbstractOverlaysToSVGFileWriter
-
Start the SVG file
- setupFile(String, int, int, String) - Method in class org.nanes.slideset.dm.write.IJ1ROIsToSVGFileWriter
-
Start the SVG file
- setupFile(String, int, int, String) - Method in class org.nanes.slideset.dm.write.IJ1ROIsToSVGFileWriter
-
Start the SVG file
- setupFileLinkColumns(SlideSet, ArrayList<String>, ArrayList<String>, ArrayList<String>) - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
Generate default path links as needed
- setupFileLinkColumns(SlideSet, ArrayList<String>, ArrayList<String>, ArrayList<String>) - Method in class org.nanes.slideset.pi.SlideSetPluginLoader
-
Generate default path links as needed
- setValueAt(Object, int, int) - Method in class org.nanes.slideset.ui.SlideSetLockedTableModel
-
- setValueAt(Object, int, int) - Method in class org.nanes.slideset.ui.SlideSetLockedTableModel
-
- setValueAt(Object, int, int) - Method in class org.nanes.slideset.ui.SlideSetTableModel
-
- setValueAt(Object, int, int) - Method in class org.nanes.slideset.ui.SlideSetTableModel
-
- setView(DatasetView) - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- setView(DatasetView) - Method in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- setVisible(boolean) - Method in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
- setVisible(boolean) - Method in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
- setVisible(boolean) - Method in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
Control dialog visibility.
- setVisible(boolean) - Method in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
Control dialog visibility.
- setVisible(boolean) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
- setVisible(boolean) - Method in class org.nanes.slideset.ui.SlideSetLauncher
-
- setWorkingDirectory(String) - Method in class org.nanes.slideset.SlideSet
-
Set the working directory of this SlideSet
- setWorkingDirectory(String) - Method in class org.nanes.slideset.SlideSet
-
Set the working directory of this SlideSet
- ShortToIntWriter - Class in org.nanes.slideset.dm.write
-
- ShortToIntWriter - Class in org.nanes.slideset.dm.write
-
- ShortToIntWriter() - Constructor for class org.nanes.slideset.dm.write.ShortToIntWriter
-
- ShortToIntWriter() - Constructor for class org.nanes.slideset.dm.write.ShortToIntWriter
-
- show() - Method in class org.nanes.slideset.ui.CommandPicker
-
Show the command picker dialog.
- show() - Method in class org.nanes.slideset.ui.CommandPicker
-
Show the command picker dialog.
- showAndWait() - Method in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
Show the dialog and wait for a user response
- showAndWait() - Method in class org.nanes.slideset.ui.PluginInputMatcherFrame
-
Show the dialog and wait for a user response
- showAndWait() - Method in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
Show the dialog and wait for a user response
- showAndWait() - Method in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
Show the dialog and wait for a user response
- showAndWait() - Method in class org.nanes.slideset.ui.RoiEditor
-
Run the ROI editor.
- showAndWait() - Method in class org.nanes.slideset.ui.RoiEditor
-
Run the ROI editor.
- showAndWait() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Run the ROI editor.
- showAndWait() - Method in class org.nanes.slideset.ui.RoiEditorIJ1
-
Run the ROI editor.
- SilentSlicer - Class in org.nanes.slideset.pi
-
Re-implementation of ij.plugin.Slicer (from which the large majority of this
is copied)to allow silent invocation by SlideSet plugins
- SilentSlicer - Class in org.nanes.slideset.pi
-
Re-implementation of ij.plugin.Slicer (from which the large majority of this
is copied)to allow silent invocation by SlideSet plugins
- SilentSlicer(ImagePlus, double, int, boolean, boolean, boolean) - Constructor for class org.nanes.slideset.pi.SilentSlicer
-
Create a slicer with pre-populated settings so that no properties
dialog box is needed.
- SilentSlicer(ImagePlus, double, int, boolean, boolean, boolean) - Constructor for class org.nanes.slideset.pi.SilentSlicer
-
Create a slicer with pre-populated settings so that no properties
dialog box is needed.
- size - Variable in class org.nanes.slideset.pi.BorderStats
-
- size - Variable in class org.nanes.slideset.pi.BorderStats
-
- size - Variable in class org.nanes.slideset.pi.BorderStatsNChan
-
- size - Variable in class org.nanes.slideset.pi.BorderStatsNChan
-
- size - Variable in class org.nanes.slideset.pi.RegionStats
-
- size - Variable in class org.nanes.slideset.pi.RegionStats
-
- size - Variable in class org.nanes.slideset.pi.RegionStatsNChan
-
- size - Variable in class org.nanes.slideset.pi.RegionStatsNChan
-
- size - Variable in class org.nanes.slideset.pi.RegionStatsNChanExclusion
-
- size - Variable in class org.nanes.slideset.pi.RegionStatsNChanExclusion
-
- sliceCount - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- sliceCount - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- sliceCountS - Static variable in class org.nanes.slideset.pi.SilentSlicer
-
- sliceCountS - Static variable in class org.nanes.slideset.pi.SilentSlicer
-
- sliceImages - Variable in class org.nanes.slideset.pi.Reslice
-
- sliceImages - Variable in class org.nanes.slideset.pi.Reslice
-
- sliceLines - Variable in class org.nanes.slideset.pi.Reslice
-
- sliceLines - Variable in class org.nanes.slideset.pi.Reslice
-
- sliceSilently(ImagePlus) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- sliceSilently(ImagePlus) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- SLIDER_MAX - Static variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- SLIDER_MAX - Static variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- SLIDER_MIN - Static variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- SLIDER_MIN - Static variable in class org.nanes.slideset.ui.BrightnessContrastRoi
-
- SlideSet - Class in org.nanes.slideset
-
Slide Set API documentation
- SlideSet - Class in org.nanes.slideset
-
Slide Set API documentation
- SlideSet(ImageJ, DataTypeIDService) - Constructor for class org.nanes.slideset.SlideSet
-
- SlideSet(ImageJ, DataTypeIDService) - Constructor for class org.nanes.slideset.SlideSet
-
- slideSet - Variable in class org.nanes.slideset.ui.RoiEditor
-
- slideSet - Variable in class org.nanes.slideset.ui.RoiEditor
-
- slideSet - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- slideSet - Variable in class org.nanes.slideset.ui.RoiEditorIJ1
-
- slideSet - Variable in class org.nanes.slideset.ui.SlideSetTableModel
-
The underlying data
- slideSet - Variable in class org.nanes.slideset.ui.SlideSetTableModel
-
The underlying data
- SlideSetException - Exception in org.nanes.slideset.ex
-
Signals a potentially recoverable SlideSet exception.
- SlideSetException - Exception in org.nanes.slideset.ex
-
Signals a potentially recoverable SlideSet exception.
- SlideSetException() - Constructor for exception org.nanes.slideset.ex.SlideSetException
-
Creates a new instance of
SlideSetException
without detail message.
- SlideSetException(String) - Constructor for exception org.nanes.slideset.ex.SlideSetException
-
Constructs an instance of
SlideSetException
with the specified detail message.
- SlideSetException(Throwable) - Constructor for exception org.nanes.slideset.ex.SlideSetException
-
- SlideSetException(String, Throwable) - Constructor for exception org.nanes.slideset.ex.SlideSetException
-
- SlideSetException() - Constructor for exception org.nanes.slideset.ex.SlideSetException
-
Creates a new instance of
SlideSetException
without detail message.
- SlideSetException(String) - Constructor for exception org.nanes.slideset.ex.SlideSetException
-
Constructs an instance of
SlideSetException
with the specified detail message.
- SlideSetException(Throwable) - Constructor for exception org.nanes.slideset.ex.SlideSetException
-
- SlideSetException(String, Throwable) - Constructor for exception org.nanes.slideset.ex.SlideSetException
-
- SlideSetIJ1Entry - Class in org.nanes.slideset
-
Note: This plugin is probably no longer necessary, as Fiji recognizes IJ2 plugins
Entry point for ImageJ1 / Fiji
- SlideSetIJ1Entry - Class in org.nanes.slideset
-
Note: This plugin is probably no longer necessary, as Fiji recognizes IJ2 plugins
Entry point for ImageJ1 / Fiji
- SlideSetIJ1Entry() - Constructor for class org.nanes.slideset.SlideSetIJ1Entry
-
- SlideSetIJ1Entry() - Constructor for class org.nanes.slideset.SlideSetIJ1Entry
-
- SlideSetIJ2Entry - Class in org.nanes.slideset
-
Entry point for ImageJ2/Fiji
- SlideSetIJ2Entry - Class in org.nanes.slideset
-
Entry point for ImageJ2/Fiji
- SlideSetIJ2Entry() - Constructor for class org.nanes.slideset.SlideSetIJ2Entry
-
- SlideSetIJ2Entry() - Constructor for class org.nanes.slideset.SlideSetIJ2Entry
-
- SlideSetLauncher - Class in org.nanes.slideset.ui
-
Main SlideSet user interface.
- SlideSetLauncher - Class in org.nanes.slideset.ui
-
Main SlideSet user interface.
- SlideSetLauncher(ImageJ, DataTypeIDService, XMLService, CSVService, SlideSetLog) - Constructor for class org.nanes.slideset.ui.SlideSetLauncher
-
- SlideSetLauncher(ImageJ, DataTypeIDService, XMLService, CSVService, SlideSetLog) - Constructor for class org.nanes.slideset.ui.SlideSetLauncher
-
- SlideSetLauncher.DropHandler - Class in org.nanes.slideset.ui
-
Drop handler for the main view pains
- SlideSetLauncher.DropHandler - Class in org.nanes.slideset.ui
-
Drop handler for the main view pains
- SlideSetLockedTableModel - Class in org.nanes.slideset.ui
-
An un-editable TableModel
for the SlideSet
class.
- SlideSetLockedTableModel - Class in org.nanes.slideset.ui
-
An un-editable TableModel
for the SlideSet
class.
- SlideSetLockedTableModel(SlideSet) - Constructor for class org.nanes.slideset.ui.SlideSetLockedTableModel
-
- SlideSetLockedTableModel(SlideSet) - Constructor for class org.nanes.slideset.ui.SlideSetLockedTableModel
-
- SlideSetLog - Class in org.nanes.slideset.ui
-
Utility for passing log messages between Slide Set components.
- SlideSetLog - Class in org.nanes.slideset.ui
-
Utility for passing log messages between Slide Set components.
- SlideSetLog() - Constructor for class org.nanes.slideset.ui.SlideSetLog
-
- SlideSetLog() - Constructor for class org.nanes.slideset.ui.SlideSetLog
-
- SlideSetPlugin - Class in org.nanes.slideset.pi
-
Slide Set commands
- SlideSetPlugin - Class in org.nanes.slideset.pi
-
Slide Set commands
- SlideSetPlugin() - Constructor for class org.nanes.slideset.pi.SlideSetPlugin
-
- SlideSetPlugin() - Constructor for class org.nanes.slideset.pi.SlideSetPlugin
-
- SlideSetPluginLoader - Class in org.nanes.slideset.pi
-
Managing command execution
- SlideSetPluginLoader - Class in org.nanes.slideset.pi
-
Managing command execution
- SlideSetPluginLoader(ImageJ, DataTypeIDService, SlideSetLog, HelpLoader) - Constructor for class org.nanes.slideset.pi.SlideSetPluginLoader
-
- SlideSetPluginLoader(ImageJ, DataTypeIDService, SlideSetLog, HelpLoader) - Constructor for class org.nanes.slideset.pi.SlideSetPluginLoader
-
- SlideSetPropertiesViewer - Class in org.nanes.slideset.ui
-
View the properties of a SlideSet
table
- SlideSetPropertiesViewer - Class in org.nanes.slideset.ui
-
View the properties of a SlideSet
table
- SlideSetPropertiesViewer(Frame, SlideSet) - Constructor for class org.nanes.slideset.ui.SlideSetPropertiesViewer
-
- SlideSetPropertiesViewer(Frame, SlideSet) - Constructor for class org.nanes.slideset.ui.SlideSetPropertiesViewer
-
- SlideSetScript - Class in org.nanes.slideset.script
-
Use Slide Set in scripts.
- SlideSetScript - Class in org.nanes.slideset.script
-
Use Slide Set in scripts.
- SlideSetScript(ImageJ, int, boolean) - Constructor for class org.nanes.slideset.script.SlideSetScript
-
Instantiate headless Slide Set services
- SlideSetScript(ImageJ) - Constructor for class org.nanes.slideset.script.SlideSetScript
-
- SlideSetScript(ImageJ, int) - Constructor for class org.nanes.slideset.script.SlideSetScript
-
- SlideSetScript(ImageJ, boolean) - Constructor for class org.nanes.slideset.script.SlideSetScript
-
- SlideSetScript(ImageJ, int, boolean) - Constructor for class org.nanes.slideset.script.SlideSetScript
-
Instantiate headless Slide Set services
- SlideSetScript(ImageJ) - Constructor for class org.nanes.slideset.script.SlideSetScript
-
- SlideSetScript(ImageJ, int) - Constructor for class org.nanes.slideset.script.SlideSetScript
-
- SlideSetScript(ImageJ, boolean) - Constructor for class org.nanes.slideset.script.SlideSetScript
-
- SlideSetTableModel - Class in org.nanes.slideset.ui
-
Swing TableModel
for the SlideSet
class.
- SlideSetTableModel - Class in org.nanes.slideset.ui
-
Swing TableModel
for the SlideSet
class.
- SlideSetTableModel(SlideSet) - Constructor for class org.nanes.slideset.ui.SlideSetTableModel
-
- SlideSetTableModel(SlideSet) - Constructor for class org.nanes.slideset.ui.SlideSetTableModel
-
- SlideSetTreeRenderer - Class in org.nanes.slideset.ui
-
TreeCellRenderer
that will change the display style
of a locked table in the tree.
- SlideSetTreeRenderer - Class in org.nanes.slideset.ui
-
TreeCellRenderer
that will change the display style
of a locked table in the tree.
- SlideSetTreeRenderer() - Constructor for class org.nanes.slideset.ui.SlideSetTreeRenderer
-
- SlideSetTreeRenderer() - Constructor for class org.nanes.slideset.ui.SlideSetTreeRenderer
-
- SlideSetViewer - Class in org.nanes.slideset.ui
-
View and edit a SlideSet
- SlideSetViewer - Class in org.nanes.slideset.ui
-
View and edit a SlideSet
- SlideSetViewer(SlideSet, ImageJ, DataTypeIDService, SlideSetLog, boolean) - Constructor for class org.nanes.slideset.ui.SlideSetViewer
-
- SlideSetViewer(SlideSet, ImageJ, DataTypeIDService, SlideSetLog, boolean, Component) - Constructor for class org.nanes.slideset.ui.SlideSetViewer
-
- SlideSetViewer(SlideSet, ImageJ, DataTypeIDService, SlideSetLog, boolean) - Constructor for class org.nanes.slideset.ui.SlideSetViewer
-
- SlideSetViewer(SlideSet, ImageJ, DataTypeIDService, SlideSetLog, boolean, Component) - Constructor for class org.nanes.slideset.ui.SlideSetViewer
-
- SlideSetViewer.DropHandler - Class in org.nanes.slideset.ui
-
Drop handler for the table header
- SlideSetViewer.DropHandler - Class in org.nanes.slideset.ui
-
Drop handler for the table header
- SlideSetWindow - Interface in org.nanes.slideset.ui
-
Interface for SlideSet window management functions
- SlideSetWindow - Interface in org.nanes.slideset.ui
-
Interface for SlideSet window management functions
- sslg - Variable in class org.nanes.slideset.script.SlideSetScript
-
- sslg - Variable in class org.nanes.slideset.script.SlideSetScript
-
- sspl - Variable in class org.nanes.slideset.script.SlideSetScript
-
- sspl - Variable in class org.nanes.slideset.script.SlideSetScript
-
- sspl - Variable in class org.nanes.slideset.ui.SlideSetLauncher
-
- sspl - Variable in class org.nanes.slideset.ui.SlideSetLauncher
-
- start() - Method in class org.nanes.slideset.ui.HttpHelpLoader
-
- start() - Method in class org.nanes.slideset.ui.HttpHelpLoader
-
- startAt - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- startAt - Variable in class org.nanes.slideset.pi.SilentSlicer
-
- startAtS - Static variable in class org.nanes.slideset.pi.SilentSlicer
-
- startAtS - Static variable in class org.nanes.slideset.pi.SilentSlicer
-
- starts - Static variable in class org.nanes.slideset.pi.SilentSlicer
-
- starts - Static variable in class org.nanes.slideset.pi.SilentSlicer
-
- status - Variable in class org.nanes.slideset.ui.NanoHTTPd.Response
-
HTTP status code after processing, e.g.
- status - Variable in class org.nanes.slideset.ui.NanoHTTPd.Response
-
HTTP status code after processing, e.g.
- STDERR - Static variable in class org.nanes.slideset.script.SlideSetScript
-
- STDERR - Static variable in class org.nanes.slideset.script.SlideSetScript
-
- STDOUT - Static variable in class org.nanes.slideset.script.SlideSetScript
-
- STDOUT - Static variable in class org.nanes.slideset.script.SlideSetScript
-
- stop() - Method in class org.nanes.slideset.ui.NanoHTTPd
-
Stops the server.
- stop() - Method in class org.nanes.slideset.ui.NanoHTTPd
-
Stops the server.
- stream - Variable in class org.nanes.slideset.ui.DynamicHelpResource.GeneratedResource
-
Resource stream
- stream - Variable in class org.nanes.slideset.ui.DynamicHelpResource.GeneratedResource
-
Resource stream
- strict - Variable in class org.nanes.slideset.pi.FindMaxima
-
- strict - Variable in class org.nanes.slideset.pi.FindMaxima
-
- StringElement - Class in org.nanes.slideset.dm
-
DataElement
for storing text values
- StringElement - Class in org.nanes.slideset.dm
-
DataElement
for storing text values
- StringElement() - Constructor for class org.nanes.slideset.dm.StringElement
-
- StringElement(String) - Constructor for class org.nanes.slideset.dm.StringElement
-
- StringElement() - Constructor for class org.nanes.slideset.dm.StringElement
-
- StringElement(String) - Constructor for class org.nanes.slideset.dm.StringElement
-
- StringToStringReader - Class in org.nanes.slideset.dm.read
-
- StringToStringReader - Class in org.nanes.slideset.dm.read
-
- StringToStringReader() - Constructor for class org.nanes.slideset.dm.read.StringToStringReader
-
- StringToStringReader() - Constructor for class org.nanes.slideset.dm.read.StringToStringReader
-
- StringToStringWriter - Class in org.nanes.slideset.dm.write
-
- StringToStringWriter - Class in org.nanes.slideset.dm.write
-
- StringToStringWriter() - Constructor for class org.nanes.slideset.dm.write.StringToStringWriter
-
- StringToStringWriter() - Constructor for class org.nanes.slideset.dm.write.StringToStringWriter
-
- stripMultipartHeaders(byte[], int) - Method in class org.nanes.slideset.ui.NanoHTTPd.HTTPSession
-
It returns the offset separating multipart file headers
from the file's data.
- stripMultipartHeaders(byte[], int) - Method in class org.nanes.slideset.ui.NanoHTTPd.HTTPSession
-
It returns the offset separating multipart file headers
from the file's data.
- SVG - Static variable in class org.nanes.slideset.dm.MIME
-
- SVG - Static variable in class org.nanes.slideset.dm.MIME
-
- SVGFileToAbstractOverlayReader - Class in org.nanes.slideset.dm.read
-
- SVGFileToAbstractOverlayReader - Class in org.nanes.slideset.dm.read
-
- SVGFileToAbstractOverlayReader() - Constructor for class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
- SVGFileToAbstractOverlayReader() - Constructor for class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
- SVGFileToIJ1ROIReader - Class in org.nanes.slideset.dm.read
-
Read ImageJ1-style ROIs from an SVG file.
- SVGFileToIJ1ROIReader - Class in org.nanes.slideset.dm.read
-
Read ImageJ1-style ROIs from an SVG file.
- SVGFileToIJ1ROIReader() - Constructor for class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
- SVGFileToIJ1ROIReader() - Constructor for class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
- SVGParseException - Exception in org.nanes.slideset.ex
-
Signals an error parsing an SVG file
- SVGParseException - Exception in org.nanes.slideset.ex
-
Signals an error parsing an SVG file
- SVGParseException() - Constructor for exception org.nanes.slideset.ex.SVGParseException
-
- SVGParseException(String) - Constructor for exception org.nanes.slideset.ex.SVGParseException
-
- SVGParseException(Throwable) - Constructor for exception org.nanes.slideset.ex.SVGParseException
-
- SVGParseException(String, Throwable) - Constructor for exception org.nanes.slideset.ex.SVGParseException
-
- SVGParseException() - Constructor for exception org.nanes.slideset.ex.SVGParseException
-
- SVGParseException(String) - Constructor for exception org.nanes.slideset.ex.SVGParseException
-
- SVGParseException(Throwable) - Constructor for exception org.nanes.slideset.ex.SVGParseException
-
- SVGParseException(String, Throwable) - Constructor for exception org.nanes.slideset.ex.SVGParseException
-
- t - Static variable in class org.nanes.slideset.dm.read.BooleanToByteReader
-
- t - Static variable in class org.nanes.slideset.dm.read.BooleanToByteReader
-
- t - Static variable in class org.nanes.slideset.dm.read.BooleanToShortReader
-
- t - Static variable in class org.nanes.slideset.dm.read.BooleanToShortReader
-
- t1 - Variable in class org.nanes.slideset.pi.Manders
-
- t1 - Variable in class org.nanes.slideset.pi.Manders
-
- t2 - Variable in class org.nanes.slideset.pi.Manders
-
- t2 - Variable in class org.nanes.slideset.pi.Manders
-
- table - Variable in class org.nanes.slideset.ui.SlideSetPropertiesViewer
-
- table - Variable in class org.nanes.slideset.ui.SlideSetPropertiesViewer
-
- table - Variable in class org.nanes.slideset.ui.SlideSetViewer
-
- table - Variable in class org.nanes.slideset.ui.SlideSetViewer
-
- template - Variable in class org.nanes.slideset.pi.CreateMask
-
- template - Variable in class org.nanes.slideset.pi.CreateMask
-
- template - Variable in class org.nanes.slideset.pi.CreateMaskMulti
-
- template - Variable in class org.nanes.slideset.pi.CreateMaskMulti
-
- Test - Class in org.nanes.slideset.pi
-
Test SlideSet compatible plugin
- Test - Class in org.nanes.slideset.pi
-
Test SlideSet compatible plugin
- Test() - Constructor for class org.nanes.slideset.pi.Test
-
- Test() - Constructor for class org.nanes.slideset.pi.Test
-
- TestMain - Class in org.nanes.slideset
-
Test class to run IJ2
- TestMain - Class in org.nanes.slideset
-
Test class to run IJ2
- TestMain() - Constructor for class org.nanes.slideset.TestMain
-
- TestMain() - Constructor for class org.nanes.slideset.TestMain
-
- textArea - Variable in class org.nanes.slideset.ui.SlideSetPropertiesViewer
-
- textArea - Variable in class org.nanes.slideset.ui.SlideSetPropertiesViewer
-
- textValueChanged(TextEvent) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- textValueChanged(TextEvent) - Method in class org.nanes.slideset.pi.SilentSlicer
-
- theMimeTypes - Static variable in class org.nanes.slideset.ui.NanoHTTPd
-
Hashtable mapping (String)FILENAME_EXTENSION to (String)MIME_TYPE
BN: Changed from 'private' to 'protected'
- theMimeTypes - Static variable in class org.nanes.slideset.ui.NanoHTTPd
-
Hashtable mapping (String)FILENAME_EXTENSION to (String)MIME_TYPE
BN: Changed from 'private' to 'protected'
- thresholds - Variable in class org.nanes.slideset.pi.OtsuSegmentation
-
- thresholds - Variable in class org.nanes.slideset.pi.OtsuSegmentation
-
- ThresholdSegmentation - Class in org.nanes.slideset.pi
-
Segment an image into 4-neighborhood regions
based on threshold values.
- ThresholdSegmentation - Class in org.nanes.slideset.pi
-
Segment an image into 4-neighborhood regions
based on threshold values.
- ThresholdSegmentation() - Constructor for class org.nanes.slideset.pi.ThresholdSegmentation
-
- ThresholdSegmentation() - Constructor for class org.nanes.slideset.pi.ThresholdSegmentation
-
- TIFF - Static variable in class org.nanes.slideset.dm.MIME
-
- TIFF - Static variable in class org.nanes.slideset.dm.MIME
-
- toString() - Method in class org.nanes.slideset.SlideSet
-
Get the name of this SlideSet
- toString() - Method in class org.nanes.slideset.SlideSet
-
Get the name of this SlideSet
- transformMatrix(double[], double[]) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Apply a matrix transformation.
- transformMatrix(double[], double[]) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Apply a matrix transformation.
- transformMatrix(double[], double[]) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Apply a matrix transformation.
- transformMatrix(double[], double[]) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Apply a matrix transformation.
- transformRotate(double[], double) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Apply a rotation about the origin
- transformRotate(double[], double, double, double) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Apply a rotation about center point {cx,cy}
- transformRotate(double[], double) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Apply a rotation about the origin
- transformRotate(double[], double, double, double) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Apply a rotation about center point {cx,cy}
- transformRotate(double[], double) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Apply a rotation about the origin
- transformRotate(double[], double, double, double) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Apply a rotation about center point {cx,cy}
- transformRotate(double[], double) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Apply a rotation about the origin
- transformRotate(double[], double, double, double) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Apply a rotation about center point {cx,cy}
- transformScale(double[], double, double) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Apply a scale
- transformScale(double[], double, double) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Apply a scale
- transformScale(double[], double, double) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Apply a scale
- transformScale(double[], double, double) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Apply a scale
- transformSkewX(double[], double) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Skew along the x-axis
- transformSkewX(double[], double) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Skew along the x-axis
- transformSkewX(double[], double) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Skew along the x-axis
- transformSkewX(double[], double) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Skew along the x-axis
- transformSkewY(double[], double) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Skew along the y-axis
- transformSkewY(double[], double) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Skew along the y-axis
- transformSkewY(double[], double) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Skew along the y-axis
- transformSkewY(double[], double) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Skew along the y-axis
- transformToDocumentSpace(double[], Node) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Transform a point ({x,y}
) to document space
by recursively looking for transform attributes in
the given nodes and all parent nodes.
- transformToDocumentSpace(double[], Node) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Transform a point ({x,y}
) to document space
by recursively looking for transform attributes in
the given nodes and all parent nodes.
- transformToDocumentSpace(double[], Node) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Transform a point ({x,y}
) to document space
by recursively looking for transform attributes in
the given nodes and all parent nodes.
- transformToDocumentSpace(double[], Node) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Transform a point ({x,y}
) to document space
by recursively looking for transform attributes in
the given nodes and all parent nodes.
- transformTranslate(double[], double, double) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Apply a translation
- transformTranslate(double[], double, double) - Method in class org.nanes.slideset.dm.read.SVGFileToAbstractOverlayReader
-
Apply a translation
- transformTranslate(double[], double, double) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Apply a translation
- transformTranslate(double[], double, double) - Method in class org.nanes.slideset.dm.read.SVGFileToIJ1ROIReader
-
Apply a translation
- tree - Variable in class org.nanes.slideset.ui.SlideSetLauncher
-
- tree - Variable in class org.nanes.slideset.ui.SlideSetLauncher
-
- triangleAltitude(double, double) - Static method in class org.nanes.slideset.pi.RoiUtils
-
Compute the altitude of a triangle.
- triangleAltitude(double, double) - Static method in class org.nanes.slideset.pi.RoiUtils
-
Compute the altitude of a triangle.
- ts - Variable in class org.nanes.slideset.pi.BorderStatsNChan
-
- ts - Variable in class org.nanes.slideset.pi.BorderStatsNChan
-
- ts - Variable in class org.nanes.slideset.pi.RegionStatsNChan
-
- ts - Variable in class org.nanes.slideset.pi.RegionStatsNChan
-
- ts - Variable in class org.nanes.slideset.pi.RegionStatsNChanExclusion
-
- ts - Variable in class org.nanes.slideset.pi.RegionStatsNChanExclusion
-
- ts - Variable in class org.nanes.slideset.pi.ThresholdSegmentation
-
- ts - Variable in class org.nanes.slideset.pi.ThresholdSegmentation
-
- TXT - Static variable in class org.nanes.slideset.dm.MIME
-
- TXT - Static variable in class org.nanes.slideset.dm.MIME
-
- TypeAlias<T> - Interface in org.nanes.slideset.dm
-
Work-around for inability to create annotation
fields with array types.
- TypeAlias<T> - Interface in org.nanes.slideset.dm
-
Work-around for inability to create annotation
fields with array types.
- typeAliasIndex - Variable in class org.nanes.slideset.dm.DataTypeIDService
-
Index of aliased types:
<real type, alias type>
- typeAliasIndex - Variable in class org.nanes.slideset.dm.DataTypeIDService
-
Index of aliased types:
<real type, alias type>
- TypeAliasMetadata - Annotation Type in org.nanes.slideset.dm
-
In order to be discoverable at run-time,
TypeAlias
es should be marked with
this annotation type.
- TypeAliasMetadata - Annotation Type in org.nanes.slideset.dm
-
In order to be discoverable at run-time,
TypeAlias
es should be marked with
this annotation type.
- typeName - Variable in class org.nanes.slideset.dm.ColumnBoundReader
-
- typeName - Variable in class org.nanes.slideset.dm.ColumnBoundReader
-
- types - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
The result type combo box
- types - Variable in class org.nanes.slideset.ui.PluginOutputMatcherFrame
-
The result type combo box