Package org.nanes.slideset.pi

Slide Set commands and plugin management

See: Description

Interface Summary

Interface	Description
MultipleResults	SlideSetPlugins which report multiple results as arrays or Lists should implement this interface.
PluginInputPicker	Scheme for selecting among available options for assigning plugin input parameter values.
PluginOutputPicker	Scheme for selecting among available options for handling plugin output values.

Class Summary

Class	Description
BinRegions	Sort one set of ROIs based on a second set of ROIs.
BorderStats	Calculate average values for pixels along region of interest borders
BorderStatsNChan	Calculate average values for pixels along region of interest borders
Correlation
CountIntersections	Count intersections between ROI borders and a binary mask
CreateMask	Generate a mask image from an ROI set.
CreateMaskMulti	Generate a mask image from an ROI set, with each ROI labeled individually.
FilterRegions	Filter one set of ROIs using another set of ROIs as a mask
FindMaxima	Find maxima in an image using ij.plugin.filter.MaximumFinder
Manders	SlideSet command for measuring Manders' Colocalization Coefficients within regions of interest.
MathAdd
MathDiv
MathMlt
MathRound	Round a double to an int
MathSub
OtsuSegmentation	Segment an image using Otsu's method.
PointsTable	Extract coordinates from PointRois into a table
RegionStats
RegionStatsNChan
RegionStatsNChanExclusion	This is a modification of RegionStatsNChan designed to exclude pixels below the given threshold.
Reslice	Reslice image along a linear ROI This command is a limited reimplementation of the ImageJ Reslice command (ij.plugin.Slicer).
ROILengths
ROIOverlap	Count overlapping pixels in two sets of ROIs.
RoiUtils	Utility functions for working with regions of interest
SilentSlicer	Re-implementation of ij.plugin.Slicer (from which the large majority of this is copied)to allow silent invocation by SlideSet plugins
SlideSetPlugin	Slide Set commands
SlideSetPluginLoader	Managing command execution
Test	Test SlideSet compatible plugin
ThresholdSegmentation	Segment an image into 4-neighborhood regions based on threshold values.
UnmixAbsorbance	Separate RGB images into two absorbance components.
WekaClassifierFile
WekaSegmentationWrapper	Wrapper to access the Trainable Weka Segmentation plugin
ZProject	Maximum-intensity Z-projection

Annotation Types Summary

Annotation Type	Description
HelpPath	Annotate a SlideSetPlugin with this annotation type to set an associated documentation page.

Package org.nanes.slideset.pi Description

Slide Set commands and plugin management

See Also:

SlideSetPluginLoader