org.nanes.slideset.pi

Class CountIntersections

java.lang.Object

org.nanes.slideset.pi.SlideSetPlugin

org.nanes.slideset.pi.CountIntersections

All Implemented Interfaces:

Runnable, MultipleResults, org.scijava.command.Command, org.scijava.plugin.SciJavaPlugin

@HelpPath(path="plugins/countIntersections.html")
public class CountIntersections
extends SlideSetPlugin
implements MultipleResults

Count intersections between ROI borders and a binary mask

Author:

Benjamin Nanes

Field Summary

Fields

Modifier and Type	Field and Description
private Boolean	dil
private ij.ImagePlus	imp
private Boolean	invert
private int[]	isect
private double[]	lenE
private double[]	lenI
private SlideSetLog	log
private ij.gui.Roi[]	rois

Constructor Summary

Constructors

Constructor and Description
CountIntersections()

Method Summary

Modifier and Type	Method and Description
private double[]	getValuesOnLine(double x1, double y1, double x2, double y2, double magFactor)
void	run()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

log

private SlideSetLog log

rois

private ij.gui.Roi[] rois

imp

private ij.ImagePlus imp

invert

private Boolean invert

dil

private Boolean dil

isect

private int[] isect

lenE

private double[] lenE

lenI

private double[] lenI

Constructor Detail

CountIntersections

public CountIntersections()

Method Detail

run

public void run()

Specified by:

run in interface Runnable

getValuesOnLine

private double[] getValuesOnLine(double x1,
                                 double y1,
                                 double x2,
                                 double y2,
                                 double magFactor)