Package | Description |
---|---|
org.nanes.slideset |
Slide Set tables and the ImageJ plugin
|
org.nanes.slideset.io |
Read and write data files
|
org.nanes.slideset.pi |
Slide Set commands and plugin management
|
Modifier and Type | Field and Description |
---|---|
private CommandTemplate |
SlideSet.commandTemplate
Command template data
|
private CommandTemplate |
SlideSet.commandTemplate
Command template data
|
Modifier and Type | Method and Description |
---|---|
CommandTemplate |
SlideSet.getCommandTemplate()
Get the command template data for this
SlideSet |
CommandTemplate |
SlideSet.getCommandTemplate()
Get the command template data for this
SlideSet |
Modifier and Type | Method and Description |
---|---|
void |
SlideSet.setCommandTemplate(CommandTemplate ct)
Set the command template data for this
SlideSet |
void |
SlideSet.setCommandTemplate(CommandTemplate ct)
Set the command template data for this
SlideSet |
Modifier and Type | Field and Description |
---|---|
private CommandTemplate |
CommandSkeletonService.CommandTemplateInputPicker.ct |
private CommandTemplate |
CommandSkeletonService.CommandTemplateOutputPicker.ct |
private CommandTemplate |
CommandSkeletonService.CommandTemplateInputPicker.ct |
private CommandTemplate |
CommandSkeletonService.CommandTemplateOutputPicker.ct |
Modifier and Type | Method and Description |
---|---|
void |
CommandSkeletonService.read(File file,
ArrayList<CommandTemplate> cts,
ArrayList<String> rootColumnTypes)
Read a command skeleton from an XML file.
|
void |
CommandSkeletonService.read(File file,
ArrayList<CommandTemplate> cts,
ArrayList<String> rootColumnTypes)
Read a command skeleton from an XML file.
|
void |
CommandSkeletonService.runSkeleton(List<CommandTemplate> cts,
List<String> rootColTypes,
SlideSet root,
SlideSetPluginLoader sspl,
boolean overrideRootWarning)
Run a command skeleton on a data table.
|
void |
CommandSkeletonService.runSkeleton(List<CommandTemplate> cts,
List<String> rootColTypes,
SlideSet root,
SlideSetPluginLoader sspl,
boolean overrideRootWarning)
Run a command skeleton on a data table.
|
void |
CommandSkeletonService.write(ArrayDeque<CommandTemplate> cts,
List<String> rootColumnTypes,
File file)
Write a command skeleton to an XML file.
|
void |
CommandSkeletonService.write(ArrayDeque<CommandTemplate> cts,
List<String> rootColumnTypes,
File file)
Write a command skeleton to an XML file.
|
Constructor and Description |
---|
CommandTemplateInputPicker(CommandTemplate ct) |
CommandTemplateInputPicker(CommandTemplate ct) |
CommandTemplateOutputPicker(CommandTemplate ct) |
CommandTemplateOutputPicker(CommandTemplate ct) |
Modifier and Type | Method and Description |
---|---|
private ArrayList<ColumnBoundReader> |
SlideSetPluginLoader.getReaders(Iterable<org.scijava.module.ModuleItem<?>> inputs,
SlideSet data,
PluginInputPicker pip,
String docPath,
CommandTemplate ct)
Create a list of
ColumnBoundReader s for each input |
private ArrayList<ColumnBoundReader> |
SlideSetPluginLoader.getReaders(Iterable<org.scijava.module.ModuleItem<?>> inputs,
SlideSet data,
PluginInputPicker pip,
String docPath,
CommandTemplate ct)
Create a list of
ColumnBoundReader s for each input |
private void |
SlideSetPluginLoader.getWriters(ArrayList<org.scijava.module.ModuleItem<?>> outputs,
boolean reduce,
PluginOutputPicker pop,
ArrayList<ColumnBoundWriter> writers,
SlideSet resultsTable,
String[] parentLabels,
ArrayList<Integer> parentFields,
ArrayList<String> linkDir,
ArrayList<String> linkPre,
ArrayList<String> linkExt,
CommandTemplate ct)
Prepare for plugin results be creating a results table
and appropriate
ColumnBoundWriter s to write the
results to it |
private void |
SlideSetPluginLoader.getWriters(ArrayList<org.scijava.module.ModuleItem<?>> outputs,
boolean reduce,
PluginOutputPicker pop,
ArrayList<ColumnBoundWriter> writers,
SlideSet resultsTable,
String[] parentLabels,
ArrayList<Integer> parentFields,
ArrayList<String> linkDir,
ArrayList<String> linkPre,
ArrayList<String> linkExt,
CommandTemplate ct)
Prepare for plugin results be creating a results table
and appropriate
ColumnBoundWriter s to write the
results to it |
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